Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4k15
(244 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0335 + 22391378-22391480,22391580-22391769,22392747-223928... 80 2e-16
09_04_0354 + 16919133-16919235,16920145-16920355,16920478-169205... 66 3e-12
07_03_0427 - 18080959-18081079,18081203-18081410,18081608-18081710 58 1e-09
03_02_0281 - 7069847-7069876,7070152-7070218,7071320-7071445,707... 56 5e-09
09_04_0554 + 18495073-18495175,18495794-18496032 29 0.69
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 27 1.6
11_04_0365 - 16818468-16818514,16818619-16821706,16822860-168229... 27 2.8
04_04_1607 + 34750114-34750193,34750472-34750622,34750730-347507... 26 3.7
08_01_0429 + 3767486-3768022,3768247-3768523,3769132-3769364,377... 26 4.9
>09_06_0335 +
22391378-22391480,22391580-22391769,22392747-22392813,
22393177-22393206
Length = 129
Score = 80.2 bits (189), Expect = 2e-16
Identities = 33/42 (78%), Positives = 36/42 (85%)
Frame = +3
Query: 6 LRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 131
L+ LA KYN +KMICRKCYARLHPRA NCRK KCGH+N LRP
Sbjct: 82 LQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRP 123
>09_04_0354 +
16919133-16919235,16920145-16920355,16920478-16920544,
16920767-16920808
Length = 140
Score = 66.5 bits (155), Expect = 3e-12
Identities = 27/41 (65%), Positives = 33/41 (80%)
Frame = +3
Query: 6 LRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLR 128
LR LA KYN K++CR+CYARL R+TNCRK KCGH+N +R
Sbjct: 89 LRELAQKYNENKLVCRRCYARLPLRSTNCRKKKCGHSNEIR 129
>07_03_0427 - 18080959-18081079,18081203-18081410,18081608-18081710
Length = 143
Score = 57.6 bits (133), Expect = 1e-09
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +3
Query: 36 EKMICRKCYARLHPRATNCRKTKCGHTNNL 125
+KMICRKCYARL +ATNCRK KCGHTN +
Sbjct: 98 KKMICRKCYARLPYKATNCRKKKCGHTNEV 127
>03_02_0281 -
7069847-7069876,7070152-7070218,7071320-7071445,
7071727-7071916,7072008-7072110
Length = 171
Score = 55.6 bits (128), Expect = 5e-09
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3
Query: 57 CYARLHPRATNCRKTKCGHTNNLRP 131
CYARLHPRA NCRK KCGH+N LRP
Sbjct: 141 CYARLHPRAVNCRKKKCGHSNQLRP 165
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 6 LRILAMKYNCEKMICR 53
L+ LA KYN +KMICR
Sbjct: 82 LQALARKYNQDKMICR 97
>09_04_0554 + 18495073-18495175,18495794-18496032
Length = 113
Score = 28.7 bits (61), Expect = 0.69
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 6 LRILAMKYNCEKMICRK 56
L +LA+KYN +KM+CRK
Sbjct: 88 LLLLALKYNEKKMVCRK 104
>10_01_0307 +
3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 3 FLRILAMKYNCEKMICRKCYARLHPRATNC 92
FLR+++++Y E+ KC R+ A +C
Sbjct: 146 FLRLVSVQYYLERQCLLKCIRRIFVHANDC 175
>11_04_0365 -
16818468-16818514,16818619-16821706,16822860-16822919,
16823595-16823954
Length = 1184
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 102 LSCDSW*HEDEDG--HSIYGKSFSHSY 28
L CD W +EDE G + ++G++ S Y
Sbjct: 493 LQCDEWNNEDESGSQYFLFGRTGSRYY 519
>04_04_1607 +
34750114-34750193,34750472-34750622,34750730-34750796,
34750905-34751142,34751903-34752113
Length = 248
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 30 NCEKMICRKCYARLHPRATNC 92
NC +C KCY + R+ +C
Sbjct: 166 NCSHAMCMKCYRQWRSRSQSC 186
>08_01_0429 +
3767486-3768022,3768247-3768523,3769132-3769364,
3773221-3773625,3773717-3773755
Length = 496
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 111 VRTLSCDSW*HEDEDGHSIY 52
+R C+S+ H DE+G S+Y
Sbjct: 12 LRVWCCNSYLHADENGRSVY 31
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,277,042
Number of Sequences: 37544
Number of extensions: 83325
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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