Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k15
         (244 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59943-1|CAA42568.1|  128|Drosophila melanogaster ubiquitin exte...    95   1e-20
X53059-1|CAA37227.1|  128|Drosophila melanogaster protein ( Frui...    95   1e-20
AY075451-1|AAL68264.1|  128|Drosophila melanogaster RE10554p pro...    95   1e-20
AE014134-712|AAF51034.1|  128|Drosophila melanogaster CG2960-PA ...    95   1e-20
BT023087-1|AAY55503.1|  335|Drosophila melanogaster IP10913p pro...    27   3.5  
AE014297-4704|AAF57114.2|  497|Drosophila melanogaster CG15553-P...    27   3.5  

>X59943-1|CAA42568.1|  128|Drosophila melanogaster ubiquitin
           extension protein protein.
          Length = 128

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 39/42 (92%), Positives = 40/42 (95%)
 Frame = +3

Query: 6   LRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 131
           LRILA KYNC+KMICRKCYARLHPRATNCRK KCGHTNNLRP
Sbjct: 82  LRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRP 123


>X53059-1|CAA37227.1|  128|Drosophila melanogaster protein ( Fruit
           fly mRNA for ubiquitin52-AA extension protein. ).
          Length = 128

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 39/42 (92%), Positives = 40/42 (95%)
 Frame = +3

Query: 6   LRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 131
           LRILA KYNC+KMICRKCYARLHPRATNCRK KCGHTNNLRP
Sbjct: 82  LRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRP 123


>AY075451-1|AAL68264.1|  128|Drosophila melanogaster RE10554p
           protein.
          Length = 128

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 39/42 (92%), Positives = 40/42 (95%)
 Frame = +3

Query: 6   LRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 131
           LRILA KYNC+KMICRKCYARLHPRATNCRK KCGHTNNLRP
Sbjct: 82  LRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRP 123


>AE014134-712|AAF51034.1|  128|Drosophila melanogaster CG2960-PA
           protein.
          Length = 128

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 39/42 (92%), Positives = 40/42 (95%)
 Frame = +3

Query: 6   LRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 131
           LRILA KYNC+KMICRKCYARLHPRATNCRK KCGHTNNLRP
Sbjct: 82  LRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRP 123


>BT023087-1|AAY55503.1|  335|Drosophila melanogaster IP10913p
           protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 206 FACYENSIVTINFPFGYYLILDLLFGSQIVSVSALCLATVGSTRMKTGIAFTANH-FLTV 30
           F  +  S+  +    G  LIL   FG  +V+++ L L +  +  +  G A+ + H +L+V
Sbjct: 180 FETFSQSVPMLGAVLGI-LILRKFFGLSVVALALLSLLSEVAANIARGFAYLSWHLYLSV 238

Query: 29  IL 24
           +L
Sbjct: 239 VL 240


>AE014297-4704|AAF57114.2|  497|Drosophila melanogaster CG15553-PA
           protein.
          Length = 497

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 206 FACYENSIVTINFPFGYYLILDLLFGSQIVSVSALCLATVGSTRMKTGIAFTANH-FLTV 30
           F  +  S+  +    G  LIL   FG  +V+++ L L +  +  +  G A+ + H +L+V
Sbjct: 342 FETFSQSVPMLGAVLGI-LILRKFFGLSVVALALLSLLSEVAANIARGFAYLSWHLYLSV 400

Query: 29  IL 24
           +L
Sbjct: 401 VL 402


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,010,928
Number of Sequences: 53049
Number of extensions: 148720
Number of successful extensions: 292
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 24,988,368
effective HSP length: 60
effective length of database: 21,805,428
effective search space used: 436108560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)