Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k15
         (244 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   1.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   3.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   3.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   3.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   3.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   6.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    19   8.8  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
 Frame = +3

Query: 30  NCEKMI-CRKCYARLHPR 80
           NCE      KCYA L PR
Sbjct: 123 NCEYAYRFNKCYAELSPR 140


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 185 IVTINFPFGYYLILDLLF 132
           I  I FP  Y++ L   F
Sbjct: 465 IARITFPVAYFMFLTFFF 482


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 185 IVTINFPFGYYLILDLLF 132
           I  I FP  Y++ L   F
Sbjct: 451 IARITFPVAYFMFLTFFF 468


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 185 IVTINFPFGYYLILDLLF 132
           I  I FP  Y++ L   F
Sbjct: 485 IARITFPVAYFMFLTFFF 502


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 185 IVTINFPFGYYLILDLLF 132
           I  I FP  Y++ L   F
Sbjct: 434 IARITFPVAYFMFLTFFF 451


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 179 TINFPFGYYLILDLLFGSQIV 117
           TINF +   L  D  FG+ I+
Sbjct: 473 TINFTYSLALSPDGQFGNYII 493


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 4/7 (57%), Positives = 7/7 (100%)
 Frame = -2

Query: 21  WRECEGR 1
           W++CEG+
Sbjct: 200 WKQCEGK 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,094
Number of Sequences: 438
Number of extensions: 1079
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)