Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k12
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    31   0.24 
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    30   0.41 
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    29   0.96 
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    29   0.96 
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    28   1.3  
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz...    27   3.9  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    26   5.1  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   6.7  
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    25   8.9  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   8.9  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
 Frame = +3

Query: 246 EKSVHDVNSAYCEIHVYGLLLVYD-SYFVHILEGSEDTLHRHLRFLFKLEIDWIERMKKS 422
           EKSV D  S +C +    +L V+D S   H+ +  ED L  +L+  F L+   + R    
Sbjct: 221 EKSVIDKISLFCHVGPEQVLAVHDVSSTYHVPQLLEDKLLEYLKIRFALDKISVSRELAL 280

Query: 423 TETDRAVLLENKDKSEPKIFRRLKMLMV--YHSISTLFFARWRALTAHPPSLVGR-LDVN 593
              +     ++  +    +F+++ +++V  Y  +   + +  +AL  H     GR LD+ 
Sbjct: 281 AGENMWSSWKHLTQGYDHLFKKVTIVLVGKYTHLQDSYISVIKAL-EHSAMRCGRKLDLQ 339

Query: 594 GPISEHME 617
              + H+E
Sbjct: 340 WVEASHLE 347


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
 Frame = -3

Query: 703 ALRPSNDNFSSAFKRSHNFVILLRQ---IFNCSMCSEIGPFTSNLPTKDGGWAVNARHRA 533
           AL   + +FSS  +R+HN   L R     F+ +  +  G FT   P   G  ++  ++  
Sbjct: 52  ALATQSRSFSSPHQRAHNAAALARSGGPGFSMNYNARTGAFTGG-PNAAGLSSLGGKYNT 110

Query: 532 KNSVLIE**TINIFSLLNI-FGSDLSLFSKRTARSVSVD 419
            ++      T+   + LN   G+ L+  SK T  SV+VD
Sbjct: 111 SSTTT----TLTTSTTLNTSSGTTLNSTSKTTTSSVAVD 145


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 591 NGPISEHMEQLKICLNKITKLCDL-LKADEKLSFEGLNAVDPRIESLPE 734
           +G +  +   ++I +NK+T++    LK  + LSF+    +DPR+  + E
Sbjct: 216 DGALLLNERNVEILVNKLTQMRGAALKMGQMLSFQDSKLIDPRVSQILE 264


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 393 IDWIERMKKSTETDRA-VLLENKDKSEPKIFRRLKMLMVYHSISTLFFARWRALTAHPPS 569
           ID I+++ KS + D A  LLE  D  +   F    M +     S LF      +   PP 
Sbjct: 644 IDEIDKVGKSHQGDPASALLELLDSEQNSAFLDYYMDIPLDVSSVLFVCTANTIDTIPPP 703

Query: 570 LVGRLDV 590
           L+ R++V
Sbjct: 704 LLDRMEV 710


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +3

Query: 117 LDVRSVLDVVEENFQKLGLKTYAIRMIYIGEHTLSKEEIIRAFEKSVHDVNSAY 278
           L  + +++ +  + ++LGL    + M +  + ++  EE++RAF + + D  + Y
Sbjct: 110 LSRKHIIEGLNASLKRLGLPYVDVIMAHRPDPSVPMEEVVRAFTQLIQDGKAFY 163


>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
           Rad31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 10  VCLKFKLNEKSVLNTE 57
           VC++ KLNEK+VLN E
Sbjct: 235 VCIEQKLNEKTVLNGE 250


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 21/83 (25%), Positives = 39/83 (46%)
 Frame = +3

Query: 453 NKDKSEPKIFRRLKMLMVYHSISTLFFARWRALTAHPPSLVGRLDVNGPISEHMEQLKIC 632
           N + S+P   R + M+ ++H+     ++  R + +   SLV RL      + H EQ  I 
Sbjct: 103 NSEYSKPVRKRAIHMIKLWHND----YSNVRGMESMS-SLVSRLPQRQSSASHSEQPTIN 157

Query: 633 LNKITKLCDLLKADEKLSFEGLN 701
           L K+  + + L A   ++   L+
Sbjct: 158 LKKVGPILERLIASSSMAATNLS 180


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 703 ALRPSNDNFSSAFKRSHNFVILLRQIFNCSMCSEIGPFTSNL 578
           +L  S  +    +   ++F+++L  IF  S C  IGPF  ++
Sbjct: 139 SLNASYKSLCKLYSYENSFIVVLNSIFVVSSC--IGPFLGSI 178


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 167 WFKNIRYSYDIYR*TYII*GRNNKSVREICT 259
           W K+IRYSY + R  Y++   +    + +C+
Sbjct: 352 WLKHIRYSYTLRR-NYLLYAMDTYLPKSVCS 381


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -2

Query: 494 FQPPEYLRF*FIFVLQKDCTV----RFRGFFHSLNPVNF 390
           F+  ++L + F+F++  +C V     F GF HSL  V F
Sbjct: 27  FKKTQWLLYVFLFIIFANCVVDVKYYFEGFSHSLLFVYF 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,134
Number of Sequences: 5004
Number of extensions: 65713
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)