Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k10
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    26   1.1  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   3.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   4.6  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    24   4.6  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   4.6  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    24   4.6  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    24   6.1  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    24   6.1  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    23   8.1  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 83  VIIIMTGFLICLFISFACMHWNL*TLF 163
           V++I+  F+ CL  +FAC H N  TL+
Sbjct: 166 VVMIVGSFIPCLHYAFAC-HANFRTLY 191


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 113 CLFISFACMHWNL*TLF 163
           C F+ +A +HWN  TLF
Sbjct: 338 CYFLEYAILHWN--TLF 352


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 257  PMGYSYYIILLFWAVLYKCAKFQLYNVS--RWVEIMFKDSNAYR 132
            P+  S+ ++L       K   F  Y V+  +WVEI+   SN Y+
Sbjct: 1241 PIKESFIVLLGSCIKQLKTENFLEYKVTFAKWVEILLSYSNEYQ 1284


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -1

Query: 220 GRSFISVLNFNYIMFRG--GLK*CSKIPMHTGKANKQAN*KTSHYYYYMKKLENLCGYEK 47
           G + I  +++ Y+   G  GL+  SK  +    AN  A   +SHY        NLC +E 
Sbjct: 818 GSAGILPISWAYMRMMGLAGLRDASKAALLN--ANYMAKRLSSHYKLVYTNKNNLCAHEF 875

Query: 46  LI 41
           ++
Sbjct: 876 IL 877


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +1

Query: 133  LYALESLNIISTHLET 180
            LY L++LN++ THL++
Sbjct: 1145 LYILDTLNLVITHLQS 1160


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 110 ICLFISFACMHWN 148
           + L ++F C HWN
Sbjct: 276 VALLVAFTCKHWN 288


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 251 GYSYYIILLFWAVLYKCA 198
           G+S++IILLF+++L   A
Sbjct: 326 GFSFFIILLFFSLLVAMA 343


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 64  NSLVSSCNNNNDWFFNLLVY*LCLYALESLNIISTHL 174
           N+++   NN++D     + Y    Y  ++LNI S H+
Sbjct: 432 NAILHCSNNSSDLLERNMSYNAHPYVADNLNISSDHI 468


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -1

Query: 268 SWSVQWDTLIILFYYSGRSFISVLNFNYIMFR 173
           ++ V+ DT+  + YY  +   +  +  Y+ FR
Sbjct: 773 NYQVRMDTMANILYYPQKPLATTRSMEYLKFR 804


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,292,278
Number of Sequences: 5004
Number of extensions: 24577
Number of successful extensions: 62
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)