Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k10
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   0.37 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   0.49 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.49 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   4.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   8.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   8.0  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.2 bits (50), Expect = 0.37
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 242 YYIILLFWAVLY 207
           YYI++L WA+ Y
Sbjct: 76  YYIVILAWAIFY 87


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 0.49
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 242 YYIILLFWAVLY 207
           YYII+L WA+ Y
Sbjct: 114 YYIIILAWALFY 125


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 0.49
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 242 YYIILLFWAVLY 207
           YYII+L WA+ Y
Sbjct: 167 YYIIILAWALFY 178


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 70 ENLCGYEKLILGIQYYV 20
          E LCG   L L + YY+
Sbjct: 6  EILCGIAVLFLALYYYL 22


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 231 NNIIRVSHWTDQDLQDY 281
           N I+  + W +Q+  DY
Sbjct: 64  NQIMTTNVWVEQEWNDY 80


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 46  VFRNHINSLVSSCNN 90
           + RNH+NS  S  N+
Sbjct: 340 IVRNHLNSTCSVTNS 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,189
Number of Sequences: 438
Number of extensions: 1852
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)