Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k06
         (701 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16MK2 Cluster: Eukaryotic translation initiation facto...    69   1e-10
UniRef50_A2I3V2 Cluster: Eukaryotic translation initiation facto...    64   2e-09
UniRef50_A7RSH7 Cluster: Predicted protein; n=1; Nematostella ve...    63   7e-09
UniRef50_O75822 Cluster: Eukaryotic translation initiation facto...    60   4e-08
UniRef50_Q7K550 Cluster: GH12681p; n=5; Sophophora|Rep: GH12681p...    56   8e-07
UniRef50_UPI0000584E77 Cluster: PREDICTED: similar to MGC81283 p...    53   8e-06
UniRef50_Q4YQF2 Cluster: Putative uncharacterized protein; n=6; ...    34   3.9  
UniRef50_A5N4G0 Cluster: Predicted exonuclease, sbcC related; n=...    33   5.1  
UniRef50_Q00ZU9 Cluster: Translation initiation factor eIF3, p35...    33   6.8  
UniRef50_A2EH37 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  
UniRef50_A6N001 Cluster: Eukaryotic translation initiation facto...    33   9.0  

>UniRef50_Q16MK2 Cluster: Eukaryotic translation initiation factor 3
           subunit 1; n=7; Endopterygota|Rep: Eukaryotic
           translation initiation factor 3 subunit 1 - Aedes
           aegypti (Yellowfever mosquito)
          Length = 241

 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 44/124 (35%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
 Frame = +3

Query: 321 MDVSWDADNFEPKLPTTLAAS--NKWEGEDEDDNVXXXXXXXXXXXXXXXXXXAAXXXXX 494
           M+  W+  + + K+P        NKW+GEDE++ V                         
Sbjct: 1   MEEDWEQLSEQEKVPIPAKKPDVNKWDGEDEEEEVKDSWEDEDELEEKKDEEKVETPKAK 60

Query: 495 XXXXXIHDKIXXXXXXXXXXXXXLVTEKTAEEMTPEQKLAEKLRQQKLQEESDLRLAMET 674
                +  KI                EK  E+MTPEQKLAEKLR QKLQEESDL+ A++T
Sbjct: 61  PKKT-LQQKIADKEKLKQEEAERRRLEKEEEDMTPEQKLAEKLRLQKLQEESDLKNALDT 119

Query: 675 FGVT 686
           FGVT
Sbjct: 120 FGVT 123


>UniRef50_A2I3V2 Cluster: Eukaryotic translation initiation factor 3
           subunit 1-like protein; n=1; Maconellicoccus
           hirsutus|Rep: Eukaryotic translation initiation factor 3
           subunit 1-like protein - Maconellicoccus hirsutus
           (hibiscus mealybug)
          Length = 237

 Score = 64.5 bits (150), Expect = 2e-09
 Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
 Frame = +3

Query: 327 VSWDADNFEPKLPTTLAASNKWEGEDEDDNV---XXXXXXXXXXXXXXXXXXAAXXXXXX 497
           + WD++NFEPK P   + +NKW+GEDEDDN+                      +      
Sbjct: 1   MDWDSENFEPK-PIASSVNNKWDGEDEDDNIKDNWEDDEDTRKDDSQRRQSAQSKKPKSR 59

Query: 498 XXXXIHDKIXXXXXXXXXXXXXLVTEKTAEEMTPEQKLAEKLRQQKLQEESDLRLAMETF 677
               I ++              L  +     MTPE+  AEKLR+QKL EE DL  A +T 
Sbjct: 60  LEEAIEERERKERERKSKLRSELEKDIDTTNMTPEEIQAEKLRRQKLLEEVDLEDARDTL 119

Query: 678 GVTEGNIG 701
           G+ EG+ G
Sbjct: 120 GL-EGDSG 126


>UniRef50_A7RSH7 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 247

 Score = 62.9 bits (146), Expect = 7e-09
 Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
 Frame = +3

Query: 333 WDADNFEPKLPTTLAASNKWEGEDEDDNVXXXXXXXXXXXXXXXXXXAAXXXXXXXXXXI 512
           WD + FEP        ++KWEGEDEDD++                              +
Sbjct: 4   WDDEKFEPGEVPADGVTDKWEGEDEDDDIKESWDDDDEDEKKEDEAKNTEAAAPKKKKTL 63

Query: 513 HDKIXXXXXXXXXXXXXLVTEKTA-----EEMTPEQKLAEKLRQQKLQEESDLRLAMETF 677
              +                EK       +E+TPE+++AEKLR+QK+ EESDL +AM+TF
Sbjct: 64  KQILKEKEEQKLLEEKRKAEEKQKLEEEDKELTPEEQMAEKLRRQKIVEESDLLVAMDTF 123

Query: 678 GV 683
           GV
Sbjct: 124 GV 125


>UniRef50_O75822 Cluster: Eukaryotic translation initiation factor 3
           subunit 1; n=36; Euteleostomi|Rep: Eukaryotic
           translation initiation factor 3 subunit 1 - Homo sapiens
           (Human)
          Length = 258

 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 43/132 (32%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
 Frame = +3

Query: 330 SWDADNFEPKLPTT------LAASNKWEGEDEDDNVXXXXXXXXXXXXXXXXXX--AAXX 485
           SWDAD F  + P         A  ++WEGEDED++V                        
Sbjct: 13  SWDADAFSVEDPVRKVGGGGTAGGDRWEGEDEDEDVKDNWDDDDDEKKEEAEVKPEVKIS 72

Query: 486 XXXXXXXXIHDKIXXXXXXXXXXXXXLVTEKTAEEMTPEQKLAEKLRQQKLQEESDLRLA 665
                   I +K              L   +  + +TPE++LA+KLR +KLQEESDL LA
Sbjct: 73  EKKKIAEKIKEKERQQKKRQEEIKKRLEEPEEPKVLTPEEQLADKLRLKKLQEESDLELA 132

Query: 666 METFGVTEGNIG 701
            ETFGV     G
Sbjct: 133 KETFGVNNAVYG 144


>UniRef50_Q7K550 Cluster: GH12681p; n=5; Sophophora|Rep: GH12681p -
           Drosophila melanogaster (Fruit fly)
          Length = 236

 Score = 56.0 bits (129), Expect = 8e-07
 Identities = 35/108 (32%), Positives = 46/108 (42%)
 Frame = +3

Query: 363 PTTLAASNKWEGEDEDDNVXXXXXXXXXXXXXXXXXXAAXXXXXXXXXXIHDKIXXXXXX 542
           PT  A+ NKWEGEDED+++                              +  K+      
Sbjct: 17  PTAAASVNKWEGEDEDEDIKDSWEDEEEKKDEEKPTKTEAPAKPKPNKALKAKLEQQALL 76

Query: 543 XXXXXXXLVTEKTAEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVT 686
                      K    ++P +KLAEKLR QK+QE SDL+ A E FGVT
Sbjct: 77  EEE-----AEAKRLANLSPAEKLAEKLRLQKIQEASDLKHAQEAFGVT 119


>UniRef50_UPI0000584E77 Cluster: PREDICTED: similar to MGC81283
           protein; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to MGC81283 protein -
           Strongylocentrotus purpuratus
          Length = 241

 Score = 52.8 bits (121), Expect = 8e-06
 Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
 Frame = +3

Query: 333 WDADNFEPKLPTT---LAASNKWEGEDEDDNVXXXXXXXXXXXXXXXXXXAAXXXXXXXX 503
           W+ ++F+P    +    AA +KWEGEDE++NV                            
Sbjct: 4   WEDEDFDPDAGFSKAGAAAGDKWEGEDEEENVKDDWAASDDEEKKDESSEQKSTSGDGAF 63

Query: 504 XXIHDKIXXXXXXXXXXXXXL-VTEKTAEEMTPEQKLAEKLRQQKLQEESDLRLAMETFG 680
                K                  EK   ++TPE+++ EKL QQK+ EE+DL LA E FG
Sbjct: 64  QVKKKKNTLEKALQRKAEKRKDKVEKEKIKLTPEEEMDEKLLQQKMVEEADLELAKEAFG 123

Query: 681 VTEGN 695
           V  G+
Sbjct: 124 VGAGD 128


>UniRef50_Q4YQF2 Cluster: Putative uncharacterized protein; n=6;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium berghei
          Length = 297

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 10/42 (23%), Positives = 26/42 (61%)
 Frame = +1

Query: 70  FVNIRLLGLRQYYVICSLFFNPTVIIAENRLQFDELHSSFVV 195
           + +++   ++QY ++C L +   VI+ EN ++FD  ++  ++
Sbjct: 69  YFSLKFANVKQYVLLCDLMYQCCVILTENNIEFDLYYADKII 110


>UniRef50_A5N4G0 Cluster: Predicted exonuclease, sbcC related; n=1;
           Clostridium kluyveri DSM 555|Rep: Predicted exonuclease,
           sbcC related - Clostridium kluyveri DSM 555
          Length = 1164

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 567 VTEKTAEEMTPEQKLAEKLRQQKLQEESDLRLAMETF 677
           V E+  ++   EQKL EKLRQ+K+  E+D+    E F
Sbjct: 346 VKEQKIKDAIEEQKLLEKLRQEKILLENDIESLKEKF 382


>UniRef50_Q00ZU9 Cluster: Translation initiation factor eIF3, p35
           subunit; n=2; Ostreococcus|Rep: Translation initiation
           factor eIF3, p35 subunit - Ostreococcus tauri
          Length = 236

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +3

Query: 612 AEKLRQQKLQEESDLRLAMETFG 680
           AEK R+Q+L EE+DLR A E FG
Sbjct: 88  AEKARRQRLVEEADLRAARELFG 110


>UniRef50_A2EH37 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 960

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 20/48 (41%), Positives = 29/48 (60%)
 Frame = +3

Query: 276 KSFHINSAADSGVLKMDVSWDADNFEPKLPTTLAASNKWEGEDEDDNV 419
           KSFH +S +DS +L + V   AD FEP+  + L A  K E ++ D +V
Sbjct: 512 KSFH-DSDSDSDLLPLFVPPVADEFEPQPISVLLARAKLESDESDIDV 558


>UniRef50_A6N001 Cluster: Eukaryotic translation initiation factor
           3, subunit 1 alpha; n=8; Magnoliophyta|Rep: Eukaryotic
           translation initiation factor 3, subunit 1 alpha - Oryza
           sativa subsp. indica (Rice)
          Length = 151

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 615 EKLRQQKLQEESDLRLAMETFGVTEGN 695
           EKLRQQ+L EE+D +   E FG  +G+
Sbjct: 10  EKLRQQRLVEEADFKSTTELFGKKDGS 36


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,270,195
Number of Sequences: 1657284
Number of extensions: 10030886
Number of successful extensions: 29544
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 28351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29510
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)