Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k06
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      29   0.85 
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   3.4  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    26   4.5  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   6.0  

>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 585 EEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNI 698
           EE++  Q+  +KLR     E  D +L +  FG TE N+
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDAKLDLFVFGSTENNL 100


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/77 (24%), Positives = 32/77 (41%)
 Frame = -2

Query: 232 THKMSPESSFSRQQQNSSVIRQTEDDFLQLSRSD*KTMNK*HNIGEAPTDVCSQIDLEK* 53
           + + + +    RQ +   ++   ED+  Q  R   K   K H    A  D+  + DLE  
Sbjct: 55  SEESATDEEAERQVREGFIVEDEEDEVPQEIRR--KKKRKKHAESTADQDMLDEEDLELV 112

Query: 52  ESIADDNSRFTKIFNIK 2
                  SRF+K+  +K
Sbjct: 113 MENTGQGSRFSKLRRLK 129


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 176 YTRVLLLSRKRRLWRHLVSDKSLSIVVRFWCS-GEKFSY 289
           Y  V L+ R      HL SD+S  IVV  W   G K  Y
Sbjct: 203 YEDVYLVERATGRIEHLASDQSKKIVVAEWSPIGHKLVY 241


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 215 WRHLVSDKSLSIVVRFWCSGEKF 283
           WR  ++ +  ++++R W SGEKF
Sbjct: 576 WR--INQRLFNVLIRIWNSGEKF 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,055
Number of Sequences: 5004
Number of extensions: 45369
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)