Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k04
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.45 
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   7.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.3  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   7.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.7  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 183 CKVRFREVYHIYILADEKLAEWGRK----EIMLAEKEMPGLMAC 302
           C VRFR +  I IL  + + E+ ++    + +L E ++  L AC
Sbjct: 351 CDVRFRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKAC 394


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 492 IYAWKGETDDEYIWCIEQ 545
           ++ W  ETDD + +C E+
Sbjct: 347 VFIWSIETDDMHEFCGEK 364


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 613 KFVKSPPSSKIILRGFPSGKINVCSIHQIYSSSVSPFQA*MGI 485
           ++++  P  +I  R        +C +HQ  S SV  F    G+
Sbjct: 204 QYLRLKPEGRISNRRVFISFSKICYLHQHLSKSVKLFNEVFGV 246


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 613 KFVKSPPSSKIILRGFPSGKINVCSIHQIYSSSVSPFQA*MGI 485
           ++++  P  +I  R        +C +HQ  S SV  F    G+
Sbjct: 222 QYLRLKPEGRISNRRVFISFSKICYLHQHLSKSVKLFNEVFGV 264


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 562 SGKINVCSIHQIYSSSVSPF 503
           +GK  +C+IHQ  S   S F
Sbjct: 268 TGKTVICTIHQPSSEVYSMF 287


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 562 SGKINVCSIHQIYSSSVSPF 503
           +GK  +C+IHQ  S   S F
Sbjct: 268 TGKTVICTIHQPSSEVYSMF 287


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,138
Number of Sequences: 336
Number of extensions: 4057
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)