Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4k04
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 252 4e-68
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ... 27 3.4
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 6.0
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 26 6.0
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 26 6.0
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 6.0
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 25 7.9
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 25 7.9
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 252 bits (617), Expect = 4e-68
Identities = 116/162 (71%), Positives = 138/162 (85%), Gaps = 1/162 (0%)
Frame = +3
Query: 216 YILADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 395
Y +AD LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6 YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65
Query: 396 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 572
L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L FP GKP
Sbjct: 66 LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125
Query: 573 LNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYK 698
LNMILDDGGDLT LVH ++P+LL D++GI+EETTTGVHNLYK
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYK 167
>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 183 CKVRFREVY-HIYILADEKLAEWGRKEIMLAEKEM 284
C+ + E Y I ++ EKL E KE++LA++EM
Sbjct: 26 CQRIYLEAYTSILLVQKEKLEELYGKEVILADREM 60
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 652 FTSFKRSGYLVWTKFVKSPPSSKIILRGF 566
+ F++ G L + K VK P + + + RGF
Sbjct: 294 YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 6.0
Identities = 27/97 (27%), Positives = 39/97 (40%)
Frame = -3
Query: 313 YFRRHAIRPGISFSANIISFRPHSANFSSAKMYIW*TSRNRTLQEHYIMRRVPSYKRRIV 134
YFR IR + AN+IS A+ S A M T R Y + R Y+R+I
Sbjct: 192 YFRLKQIRLCQTIQANVIS---SGADISRATMAELVTFR-------YYLGRCHLYQRKIH 241
Query: 133 YLNTYKFNTFLTKNLICYSSSMLDIFFYVVKILVNNK 23
+ +FL CY L + + +L+ K
Sbjct: 242 QAKDHLLFSFLQCPDECYHQKRLSLIYLTTCLLILGK 278
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = -2
Query: 347 YSGTFEYFSWSIFPTTCHKAWHFFLC*HNFFSAPFSQFLVS*NVYMVNFTKSNLARALYY 168
Y + ++W F T +K H+FL H + P + F+ F S++ L
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVY--VPLNSFMSKSLSTFFTFFVSSVLHELVM 413
Query: 167 ATSAFL*KTY-CIFKYVQIQYI 105
+ Y F+ QI YI
Sbjct: 414 GCITLKIRGYGLFFQMTQIPYI 435
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +2
Query: 257 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 436
R+Y R ++PY S SS S ++ STNS N SR T + +
Sbjct: 90 RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149
Query: 437 H 439
H
Sbjct: 150 H 150
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 600 DLTNLVHTKYPDLLKDVKG 656
D N + TK+P ++KDV+G
Sbjct: 376 DRLNKLQTKFPHVMKDVRG 394
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 307 RRHAIRPGISFSANIISFRPHSANFSS 227
R A++PG + +I +RP NF+S
Sbjct: 31 RERAVKPGYTAPEDIKRYRPGRGNFAS 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,037
Number of Sequences: 5004
Number of extensions: 65273
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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