Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4j18
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    41   2e-04
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    27   2.0  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.0  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   8.1  

>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +3

Query: 183 AEIISIKEVQGQRGFYVHYVDFNKRLDEWVGESWLDTRK-VQFP 311
           AEI+ I++      +YVHY D+NKRLDEW+    +D  K +++P
Sbjct: 38  AEILMIQKRTRGVVYYVHYNDYNKRLDEWITIDNIDLSKGIEYP 81


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 268 GWVNLGWTLVKSNSLDGMEQQQ--VVQLLQRKHSLDQEVALCLLLLMTQSAMR 420
           G VNLG T   ++ L  M Q    V  LL  +HSL   +  C+L  M Q   R
Sbjct: 126 GLVNLGNTCFMNSVLQLMTQTPPLVQYLLSGQHSLSCRMNACVLCRMEQHVAR 178


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 685  SLSKEGGLRFLFIFFCKAAARTAPPLTSDEE 593
            +LSKEGGL      +  + A   PP  +DEE
Sbjct: 937  ALSKEGGLLSALSSYLSSYANDEPPCPTDEE 967


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 237 YVDFNKRLDEWVGESWLDTRKVQFPRRD 320
           Y D +  +DEW    WLD+   Q+ +++
Sbjct: 751 YGDKSLSVDEWTRRKWLDSWVFQYQKQN 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,301
Number of Sequences: 5004
Number of extensions: 60548
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)