Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4j18
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073... 39 0.003
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 30 1.6
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 30 2.1
10_01_0070 + 902999-903354,904354-904600,904718-904897,905087-90... 29 4.8
06_03_1442 - 30172595-30172606,30172607-30172684,30173034-301734... 29 4.8
06_03_1439 - 30157110-30157121,30157122-30157199,30157549-301579... 29 4.8
06_03_1427 - 30090464-30090475,30090476-30090553,30090903-300913... 29 4.8
06_03_1422 + 30058936-30058975,30059057-30059233,30060848-300610... 29 4.8
10_08_0117 + 14942478-14942628,14943247-14943315,14943701-149438... 28 8.4
>07_03_1343 -
25905475-25905678,25907025-25907167,25907273-25907366,
25907526-25907687,25907884-25907952,25908631-25908843,
25909054-25909113,25909294-25909382,25909745-25910063
Length = 450
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 225 FYVHYVDFNKRLDEWVGESWLDTRKVQ 305
+YVHY +FN+RLDEWV LD V+
Sbjct: 100 YYVHYTEFNRRLDEWVKLEQLDLETVE 126
>07_03_0860 +
22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 441 RTITNQLTQPKTHEKAHFSNALNGSAQKNALAVVEPRQLVSRPASP 578
R T ++T P THE+ ++ S Q+ +V + Q VS SP
Sbjct: 788 RKTTVKITHPDTHEELKLDKRMDSSGQRGLPSVQQQSQPVSTYGSP 833
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 253 NVSMNGWVNLGWTLVKSNSLDGMEQQQVVQLLQRKHSLDQEVALCLLLLMTQSAMRIRSL 432
N+S ++ LGW +KSN ME ++++L +D E+ + + +S +R L
Sbjct: 674 NLSSLQYLKLGWDSIKSNKYFAMEVGKLMELRILNICVDNEIDESMKKALLESLCGLRKL 733
>10_01_0070 +
902999-903354,904354-904600,904718-904897,905087-905332
Length = 342
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = +3
Query: 171 DWPLA-----EIISIKEVQGQRGFYVHYVDFNKRLDE-WVGE 278
DW L EI ++ E +G R FYVH K DE W GE
Sbjct: 292 DWELTDADRQEISALPEFRGNRDFYVHESGPYKTTDEFWDGE 333
>06_03_1442 -
30172595-30172606,30172607-30172684,30173034-30173435,
30173503-30173577,30173667-30173822,30173952-30174143,
30174202-30174208,30175866-30175918
Length = 324
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 217 KEDFTCIMLILINVSMNGWVNLGWTLVKSNSLD 315
K +F C + N +NG + GW++++S+ +D
Sbjct: 224 KNNFACSLFRGFNEVLNGLADDGWSVIESDGID 256
>06_03_1439 -
30157110-30157121,30157122-30157199,30157549-30157950,
30158018-30158092,30158182-30158337,30158467-30158658,
30158717-30158723,30160381-30160433
Length = 324
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 217 KEDFTCIMLILINVSMNGWVNLGWTLVKSNSLD 315
K +F C + N +NG + GW++++S+ +D
Sbjct: 224 KNNFACSLFRGFNEVLNGLADDGWSVIESDGID 256
>06_03_1427 -
30090464-30090475,30090476-30090553,30090903-30091304,
30091372-30091446,30091536-30091691,30091821-30092012,
30093735-30093908,30094966-30095123,30096738-30096914,
30096996-30097035
Length = 487
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 217 KEDFTCIMLILINVSMNGWVNLGWTLVKSNSLD 315
K +F C + N +NG + GW++++S+ +D
Sbjct: 387 KNNFACSLFRGFNEVLNGLADDGWSVIESDGID 419
>06_03_1422 +
30058936-30058975,30059057-30059233,30060848-30061005,
30062063-30062236,30063959-30064150,30064280-30064435,
30064525-30064599,30064667-30065068,30065418-30065495,
30065840-30066173,30066275-30066339
Length = 616
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 217 KEDFTCIMLILINVSMNGWVNLGWTLVKSNSLD 315
K +F C + N +NG + GW++++S+ +D
Sbjct: 387 KNNFACSLFRGFNEVLNGLADDGWSVIESDGID 419
>10_08_0117 +
14942478-14942628,14943247-14943315,14943701-14943801,
14944395-14944619
Length = 181
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +1
Query: 262 MNGWVNLGWTLVKSNSLDGMEQQQVVQLLQRKHSLDQEVALCLLLLMTQSAMRIRSLV 435
+ W+N+G+ L + LD E++ + +L +++Q + L L + R+ V
Sbjct: 55 LRNWLNIGFQLPRDQDLDLAEKKGLTVMLSTTENVEQGFGIIKLDLTASLLSKCRNCV 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,460,189
Number of Sequences: 37544
Number of extensions: 413748
Number of successful extensions: 1041
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -