Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4j16
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    27   2.2  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   3.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.9  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   6.8  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.8  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    25   9.0  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   9.0  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   9.0  

>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 250 VSKHFFQNLPEDFAGISYYFWKTKT 176
           VSKH  QNL + F  +  +F +T T
Sbjct: 84  VSKHRIQNLAQQFQNVECWFKETST 108


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = +1

Query: 247 SQKALGCSIWYLLSKNLNLHFMEQ----YQG-NIFYCLLYNDEVLTVINYLKPG 393
           S   LG S W L   N+N H  E+    Y+G   +Y   +N   L+ + +L  G
Sbjct: 530 SALVLGTSFWPLSPNNVNFHLPEELVPLYEGFQNYYYSCHNGRKLSWLFHLSKG 583


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 38  FKIDSVFSSISSKMLIHTDIYVLLILICISEC 133
           F I   F SI +KML+      L I IC S C
Sbjct: 526 FSILVQFYSIQNKMLVKNGDEALTIAICDSRC 557


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 11  LNSLQMLIFF--KIDSVFSSISSKMLIHTDIYVLLILICISECH 136
           L  L+  IFF   I SVFSSI + + +   +   L+L+ I++ H
Sbjct: 499 LQPLEACIFFISVIVSVFSSIENGIYVSVCLAAALLLLRIAKPH 542


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 346 TNNKKYFLDTAP*NVSLDFYLVNTRLNTQELFVSKHFFQNLPEDFAGI 203
           T +  Y +D    N++ D  L+N +++T+E         N+P+ F G+
Sbjct: 144 TASNNYSVDHIVSNLANDNTLLNRQVSTEEWNSHLRHLLNIPKCFLGV 191


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +1

Query: 277 YLLSKNLNLHF----MEQYQGNIFYCLLYNDEVLTVINYLKPGV 396
           Y +SKNL         E  + N  Y + YND VLT  +Y+  G+
Sbjct: 524 YTMSKNLQHTADSIRTELEECNYQYKVQYNDRVLTADSYIAEGL 567


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 292 FYLVNTRLNTQELFVSKHFFQNLP 221
           F  +NT  NT+EL+ S H F   P
Sbjct: 563 FNTLNTFYNTEELYFSIHDFGGTP 586


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -2

Query: 364 IPHHYITNNKKYFLDTAP*NVSLDFYLVNTRLNTQELFVSKHFFQ 230
           I  H +  NK Y+L     N  L   L    +NT   F   HF Q
Sbjct: 168 IRKHRLIANKNYYLFLFKFNRKLALELQRAYINTMNWFYLYHFEQ 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,290
Number of Sequences: 5004
Number of extensions: 40108
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)