Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4j16
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z81454-1|CAB03803.1|  320|Caenorhabditis elegans Hypothetical pr...    30   0.87 
AC006714-19|AAK39597.1|  218|Caenorhabditis elegans F-box a prot...    29   2.7  
AC006714-15|AAK39600.1|  251|Caenorhabditis elegans F-box a prot...    29   2.7  
U58756-7|AAY44004.1|  220|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF025456-2|AAB70958.1|  441|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.4 protein.
          Length = 358

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -1

Query: 155 WLLYFLCGIQRYKSKSVVHIYLYELAFLMKLN*KLSQF*KKLTFVDYLNL 6
           W +  +CGI +  + +++H+ ++ L F +  N K     K    VD+LN+
Sbjct: 106 WQIIIMCGILQISTATMIHLLIFRLKFAIPPNAKYRSVIK--YSVDFLNI 153


>Z81454-1|CAB03803.1|  320|Caenorhabditis elegans Hypothetical
           protein B0391.3 protein.
          Length = 320

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
 Frame = -2

Query: 436 GKT*SLIEQCYLVRHRASNSLLQSIPHHYITNNKKYFLDTAP*NVSLDF----YLVNTRL 269
           G   S+    ++ R+ A N+        YI+  K+  L  AP    + +    +L+    
Sbjct: 77  GSAMSIFASHFIYRYGAVNT---DFKLKYISGTKQSILFIAPIFTGIVWGLFCWLIMGES 133

Query: 268 NTQELFVSKHFFQNLP---EDFAGISYYFWKTKTER 170
           +T+  F+ KHF +      E+ A ++YYFW    +R
Sbjct: 134 STKTAFLRKHFQEEFGLKIEECAYVAYYFWPVDEDR 169


>AC006714-19|AAK39597.1|  218|Caenorhabditis elegans F-box a protein
           protein 92 protein.
          Length = 218

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 346 LYNDEVLTVINYLKPGV 396
           LY D+++ V++YLKPGV
Sbjct: 146 LYPDKIIKVVSYLKPGV 162


>AC006714-15|AAK39600.1|  251|Caenorhabditis elegans F-box a protein
           protein 91 protein.
          Length = 251

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 346 LYNDEVLTVINYLKPGV 396
           LY D+++ V++YLKPGV
Sbjct: 146 LYPDKIIKVVSYLKPGV 162


>U58756-7|AAY44004.1|  220|Caenorhabditis elegans Hypothetical
           protein F58F9.10 protein.
          Length = 220

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 307 NVSLDFYLVNTRLNTQELFVSKHFFQNLPEDFA--GISYYFWKTKTERCRSLCGCCTFCV 134
           N  L  +L+   +  Q+ FV ++F Q   +     G  +  W T T++C+  CG C+  +
Sbjct: 2   NYFLSLFLIVLLVINQDSFVIRYFKQCAADVLCPPGGLWSEWTT-TDKCKQSCGSCSEVI 60

Query: 133 AFR 125
             R
Sbjct: 61  YIR 63


>AF025456-2|AAB70958.1|  441|Caenorhabditis elegans Hypothetical
           protein C46F9.3 protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
 Frame = -2

Query: 289 YLVNTRLNTQELFVSKHFFQNL------PEDFAGISYYF---WKTKTERCRSLCGCCTFC 137
           YL N++ ++   FV KH F+N+        D++ +  +F   W+ + ++     G   +C
Sbjct: 136 YLPNSQPDSDNSFVMKHTFKNISRFVVKERDYSDLEEHFNIPWRMQIQKSNEFLGIFLYC 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,428
Number of Sequences: 27780
Number of extensions: 223186
Number of successful extensions: 602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)