Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4j14
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224           31   0.67 
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498...    30   1.5  

>02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224
          Length = 508

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 36  LFSTS*SCTS*YRPIRRPERQLLLRRISDCDARSWKSAPTF 158
           +F     CT    P RRP  Q +LRR+  C AR W+  P F
Sbjct: 469 VFKLGVECTM-MDPQRRPSMQTVLRRLRQC-ARWWRRFPCF 507


>03_06_0565 +
           34747278-34748066,34748170-34748406,34749777-34749869,
           34751752-34751988,34752398-34752584,34752956-34753028,
           34753145-34753289,34753670-34753779,34754127-34754258,
           34754328-34754469,34754545-34754679,34756278-34756435,
           34757327-34757401,34757505-34757643,34757838-34757952,
           34758016-34758107,34758500-34758613
          Length = 990

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 130 PDPGSLPLLSQTPSLVVKCDQEGD 201
           P+P S P+LS  PS++ +C Q  D
Sbjct: 290 PEPFSRPILSANPSIIARCLQPSD 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,139,602
Number of Sequences: 37544
Number of extensions: 278362
Number of successful extensions: 745
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)