Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4i23
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    27   2.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.1  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   6.7  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    25   8.8  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   8.8  

>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 36  RNVDFDSFDLFFACICFYATCCFAR 110
           +NVDF++  +F AC+  Y + C  +
Sbjct: 439 KNVDFENQHIFTACVEIYLSYCITQ 463


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 459  PAFVSPTQSPYSVQPRRIQPP 397
            P    P QSP  VQP   QPP
Sbjct: 1031 PMAADPFQSPLYVQPTGFQPP 1051


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 227 WLSKY*NLNNSVLILLRID*YQNVKSPLSVTKFT 126
           W  +  ++N S   ++++D Y N+KS LS  K T
Sbjct: 386 WNWELGSVNESEYTVVKVDFYNNIKSYLSEVKNT 419


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 428 YGDCVGETKAGCF*QRNIIEIRETIPRTQRC*RPY**GISGCEHRIGV-PGYPVSCDRED 604
           +  C+G      F ++  +EIR+  P T+ C       + G EH I +    P   DR +
Sbjct: 239 FNKCLGNMLLYRFERQQYLEIRQQYPDTEMC------DLYGVEHLIRLFVSLPELIDRTN 292

Query: 605 MQRQ 616
           M  Q
Sbjct: 293 MDSQ 296


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 435  TVWEKQKPDVSDNEISSKFVKLF 503
            T+ EKQ  D++DN+  +K + LF
Sbjct: 1011 TIEEKQDNDITDNQDDNKELNLF 1033


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,418
Number of Sequences: 5004
Number of extensions: 45480
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)