Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4i23
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23528-2|AAK31387.1|  984|Caenorhabditis elegans Calsyntenin/alc...    31   0.66 
AY091591-1|AAM00045.1|  984|Caenorhabditis elegans calsyntenin p...    31   0.66 
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical ...    28   6.2  

>U23528-2|AAK31387.1|  984|Caenorhabditis elegans
           Calsyntenin/alcadein homolog protein1, isoform a
           protein.
          Length = 984

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 405 ECGAVGHCTATVWEKQKPDVSDNEISSKFVKLFRGLKDVKDLIN 536
           E GA     A  W    P+V DNE  S +  LF G+ DV  +++
Sbjct: 415 EAGATSDFRAAEWRWSMPEVCDNEWHS-YSLLFNGIDDVNVIVD 457


>AY091591-1|AAM00045.1|  984|Caenorhabditis elegans calsyntenin
           protein.
          Length = 984

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 405 ECGAVGHCTATVWEKQKPDVSDNEISSKFVKLFRGLKDVKDLIN 536
           E GA     A  W    P+V DNE  S +  LF G+ DV  +++
Sbjct: 415 EAGATSDFRAAEWRWSMPEVCDNEWHS-YSLLFNGIDDVNVIVD 457


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
           protein F45E4.4 protein.
          Length = 2361

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 436 VAVQCPTAPHSAPRFRLSHHTCGPLAHS-FG 347
           +A+  PT PHSA     S H+ G  AHS FG
Sbjct: 211 IAISHPTPPHSAKTDTGSRHSSGSSAHSQFG 241


>Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical
           protein C01G6.5 protein.
          Length = 952

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 523 LTSLSPRNSFTNFDDISLSETSGFCFSHTVAVQCPTA 413
           L SLS +      +D ++S +S F    T  V CPTA
Sbjct: 347 LVSLSEKAQDVQSNDFTISASSAFTVISTSGVLCPTA 383


>AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical
           protein Y56A3A.4 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = +3

Query: 435 TVWEKQKPDVSDNEISSKFVKLFRGLKDVKDLINEEYLAASIESACQDIQYPAIAKI 605
           ++ EK K D    +ISS  V L   +KDV     ++++++ I+ AC+ I+   + KI
Sbjct: 227 SIMEKSKLDDLMQQISSTTV-LEENVKDVLVEYADDFVSSLIDKACKMIKNREVKKI 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,154,265
Number of Sequences: 27780
Number of extensions: 269803
Number of successful extensions: 862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)