Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4i20
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286...    28   6.2  
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175...    28   8.3  
01_01_0118 - 871481-872606,872795-872950,873051-873817                 28   8.3  

>03_01_0369 -
           2863159-2863491,2864149-2864214,2865045-2865140,
           2865530-2865632,2865771-2865838,2866570-2866712,
           2867050-2867242,2867602-2867640,2867742-2867807,
           2868617-2869651
          Length = 713

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 53  QVVYIKRMKKQKFVGTVAKKTS 118
           QV Y KR+K+  FVG+V K  S
Sbjct: 549 QVAYYKRLKRVTFVGSVPKSAS 570


>02_01_0266 -
           1758439-1758599,1758682-1758769,1759363-1759564,
           1759664-1759800,1760169-1760268,1760350-1760522,
           1760797-1760941,1761018-1761139,1761225-1761470,
           1761962-1762182,1762278-1762338,1762409-1762487,
           1762572-1762651,1763221-1763292,1763382-1763449,
           1763550-1763588,1763828-1763903,1763992-1764006
          Length = 694

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 47  NLQVVYIKRMKKQKFVGTVAKKTSSVLNSNLNKALDERRKLQIKLREATNKQHQD 211
           +L+ V +   K++  +    +K    +N NLN  ++ R+    KL  A  K+H D
Sbjct: 397 DLERVLLSNRKQEGLLQEEIQKLKDEIN-NLNSYIESRKSESSKLESALAKKHND 450


>01_01_0118 - 871481-872606,872795-872950,873051-873817
          Length = 682

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 687 SNSVNNNFL-QPISTLGFLRRFVFVLTNKL 601
           S  +NNN +  P++ +G    FV+VLT +L
Sbjct: 159 SKEINNNVMYSPVACMGTSSSFVYVLTGRL 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,320,046
Number of Sequences: 37544
Number of extensions: 312167
Number of successful extensions: 606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)