Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4i19
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0558 + 4109929-4110042,4110989-4111097,4111404-4111563,411... 28 1.6
02_02_0373 - 9534016-9534226,9534251-9534297,9534453-9534500,953... 27 2.8
07_03_1181 + 24606407-24606480,24607060-24608752 27 3.8
11_04_0097 + 13448740-13450725 27 5.0
04_04_0132 + 22998941-22999073,22999218-22999347,23000257-230009... 27 5.0
04_04_1333 - 32721968-32721973,32722101-32722706,32722822-32722941 26 6.6
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 26 8.7
08_01_0398 - 3515439-3515573,3515965-3516516 26 8.7
04_03_0097 + 11166422-11166529,11166647-11167277,11167385-11167533 26 8.7
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473... 26 8.7
01_06_0256 - 27923497-27923855,27923944-27924016,27924116-27924121 26 8.7
>02_01_0558 +
4109929-4110042,4110989-4111097,4111404-4111563,
4111721-4111796,4111984-4112109,4112233-4112484
Length = 278
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 85 AEAAVDLSGNPAEASANTEQPKKIVTFTTNRRSNWKKSER 204
+E+ +D+ G P E S N K++ +NR S + +R
Sbjct: 103 SESLLDIEGGPCEQSTNPLDVKRVRRMVSNRESARRSRKR 142
>02_02_0373 -
9534016-9534226,9534251-9534297,9534453-9534500,
9534772-9534972,9535090-9535215,9535386-9535461,
9535617-9535776,9536074-9536182,9537225-9537398
Length = 383
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 85 AEAAVDLSGNPAEASANTEQPKKIVTFTTNRRSNWKKSER 204
+E+ +D+ G P E S N K++ +NR S + +R
Sbjct: 123 SESLLDIEGGPCEQSTNPLDVKRMRRMVSNRESARRSRKR 162
>07_03_1181 + 24606407-24606480,24607060-24608752
Length = 588
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 141 AAQEDSYFYDKQKEQLEKIRKKLKLNPEISQKEDK*AEKLR 263
A ED +K + EK RKK K + +KE+K E+++
Sbjct: 64 AGAEDGNETKSEKRKKEKKRKKAKALEALEEKENKEREEMK 104
>11_04_0097 + 13448740-13450725
Length = 661
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 58 VYQDLEQERAEAAVDLSGNP--AEASANTEQPKK 153
+Y+D+E+E+AEAA + AEA A E+ +K
Sbjct: 558 LYEDVEREKAEAAARAAEEKARAEALAKEEEERK 591
>04_04_0132 +
22998941-22999073,22999218-22999347,23000257-23000950,
23001545-23001580,23003165-23003446
Length = 424
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 135 YGAAQEDSYFYDKQKEQLEKIRKKLKLNPEISQKE 239
YG+ Y++ +K+ E++R KL+ ISQK+
Sbjct: 366 YGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQ 400
>04_04_1333 - 32721968-32721973,32722101-32722706,32722822-32722941
Length = 243
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 119 AGFPDRSTAASALSCSRSWYTRRSCKP 39
+ P+ AASAL C+ S + RSC P
Sbjct: 76 SALPEIDGAASALPCTASTASPRSCVP 102
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 146 GCSVFAEASAGFPDRSTAASALSCSRSWYTRRSCKPS 36
G ++ SA P RS S SC R + +C P+
Sbjct: 16 GAALRKTGSAPSPTRSCTTSCRSCGRGRWRAPACSPA 52
>08_01_0398 - 3515439-3515573,3515965-3516516
Length = 228
Score = 25.8 bits (54), Expect = 8.7
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 150 EDSYFYDKQKEQLEKIRKKLKLNPEISQKEDK*AEKLRQKHTKINIFQYICFQ*IKRLNI 329
E S + KE+ E IRK + L P S+ E A+ L ++ + C I+ L +
Sbjct: 118 EQSKIERQHKEECEAIRKMISLQPPRSETEKLIAD-LEKEIANLEAENTAC---IRTLEL 173
Query: 330 KKK 338
+KK
Sbjct: 174 RKK 176
>04_03_0097 + 11166422-11166529,11166647-11167277,11167385-11167533
Length = 295
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 34 VEGLQLRLVYQDLEQERAEAAVDLSGNPAEASANTEQPKKIVTFTTNRRSNWKKSERN*N 213
VEGL L ++ QE+ A+ G + + Q K + + +N+KK ++N N
Sbjct: 135 VEGLIASLDVEEKAQEKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNN 194
>02_03_0272 -
17146578-17146691,17146806-17146926,17147260-17147365,
17147469-17147551,17147688-17147815,17147897-17147983,
17148064-17148174,17148502-17148669,17148753-17148837,
17148921-17149037,17149127-17149203,17149299-17149370,
17150538-17150634,17150750-17150952,17151115-17151217,
17151324-17151391,17151461-17151514,17151595-17151704,
17151982-17152060,17152171-17152233,17153410-17153529,
17153913-17153969,17154071-17154187,17156426-17156476,
17156591-17156689,17156787-17156935,17158090-17158312
Length = 953
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 58 VYQDLEQERAEAAVDLSGNPAEASANTEQPKKI 156
++ D +E + AVDL+ NPA+ A T + K++
Sbjct: 872 LFLDTMKEYEDRAVDLALNPAKLQALTNKLKEV 904
>01_06_0256 - 27923497-27923855,27923944-27924016,27924116-27924121
Length = 145
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 168 DKQKEQLEKIRKKLKLNPEISQKEDK*AEKLRQ 266
+K+K+ E+ +KK K E +K+ + AEKL+Q
Sbjct: 84 EKKKKDEEEKKKKEKEKEEEEKKKKECAEKLKQ 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,498,029
Number of Sequences: 37544
Number of extensions: 90899
Number of successful extensions: 445
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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