Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4i15
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 29 0.91
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 28 1.2
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 27 2.1
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 3.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 3.7
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 6.4
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 26 6.4
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 8.5
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 8.5
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 8.5
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|... 25 8.5
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 25 8.5
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 8.5
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 28.7 bits (61), Expect = 0.91
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +1
Query: 151 NNFVNMTKRTNPFIDDFLPQSKIHVSLKKYDKHSTDNEKRLKKVYEKTLQMLFNGAK 321
N FV TK + P+ I ++ YD DN K +K +K QM K
Sbjct: 675 NEFVLTTKSFIRNVTAIRPEWLIELAPNYYDLDDFDNNKEVKSALQKVYQMAARSKK 731
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 232 KKYDKHSTDNEKRLKKVYEKTLQMLFNGAKKGTTTETNNN 351
K DK S DN +K+ + K + F+G K TT N
Sbjct: 394 KSGDKKSNDNYNGMKRNFRKGNRGAFDGRSKEVTTSKKQN 433
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +1
Query: 352 LQDSKVRKDKKKQLFIGKDGNLLHSGCLIETQSIRKNCHCGVTSETKCAYC 504
+ SK D ++L +L GC I K+CH + +T A C
Sbjct: 176 VHSSKFMSDHSQKLLRNSKHGILVVGCGQSAAEIWKHCHYSLDPKTPLAMC 226
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 390 LFFFVFSHFTILQVVVGFSSCTLFGAIK*HL*GFFINFLQSFFIVC 253
+FFF+ F+ +V VGFS CTL ++ FF+ + I+C
Sbjct: 1 MFFFLV--FSACEVFVGFSLCTLVISVP----FFFLQMTPFYSILC 40
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +1
Query: 514 LCDSCLHTCAGCEQVYCNKCLFVGSEG-SEICVSCY 618
+C SC HTC C + L G + C C+
Sbjct: 70 VCSSCAHTCTACRMRIKDYALMSGYDSYHRECFRCH 105
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 199 FLPQSKIHVSLKKYDKHSTDNEKRLKKVYEKTLQMLF 309
F S +H+ L YDK + D + Y K LQ F
Sbjct: 1161 FSATSTVHLQLMDYDKQNNDFVDAQEIAYTKLLQQKF 1197
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +1
Query: 490 KCAYCEFVLCDSCLHTCAGCEQVYCNKCL 576
+C YC + C GCE Y CL
Sbjct: 270 QCEYCGLDKNPETILLCDGCEAAYHTSCL 298
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +1
Query: 244 KHSTDNEKRLKKVYEKTLQML----FNGAKKGTTTET-NNNLQDSKVRKDKKKQL 393
K N R KK+YE LQ L FN + TTE+ N + + ++ +QL
Sbjct: 62 KQRAMNVLRQKKIYESQLQQLQQQSFNMEQAAMTTESLKNTMATVQTMQETARQL 116
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 484 ETKCAYCEFVLCDSCLHTCAGCEQVYC 564
ET C +++ DSCL+T C YC
Sbjct: 952 ETDCTLGQYIE-DSCLNTNVSCGGEYC 977
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Frame = +1
Query: 532 HTCAGCEQVYCNKCL-------FVG-SEGSEICVSCYS 621
H C C V+CN+C +G ++ +C SCYS
Sbjct: 190 HHCRNCGGVFCNQCSSKTLSLPHLGINQPVRVCDSCYS 227
>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 387 FFFVFSHFTILQVVVGFSSCTLFGAI 310
F F F +F ++ +GFSSC + +
Sbjct: 15 FVFPFYYFLLIITEIGFSSCIQYSGL 40
>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 704 LFNYNNNMSVH*YIIKVSLSYSSIKI 627
LFN+ N MS+ Y+++ S+ + + I
Sbjct: 129 LFNFLNGMSIGLYLVQASVQHHPVSI 154
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 8.5
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +1
Query: 421 HSGCLIETQS--IRKN-CHCGVTSETKCAYCEFVLCDSCLHTCAGCEQVYCNKCLFVGSE 591
H CL +T S ++ N C+ + S+ A C F C+S H +C + E
Sbjct: 166 HKLCLRKTISEPVKCNLCYECIESDELRANCPFTDCNSINHLTCLASSFLTEECQVLPIE 225
Query: 592 GSEICVSC 615
G +C C
Sbjct: 226 G--MCTKC 231
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +1
Query: 475 VTSETKCAYCEFVLCDSCLHTCAGCEQVYCNKCLFVGSEGSEICVSC 615
V+ E +C C +L D + C +C CL S C +C
Sbjct: 163 VSRELECQICFGMLYDPVVSPCG---HTFCGPCLMQALTQSPQCPTC 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,155
Number of Sequences: 5004
Number of extensions: 61834
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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