Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4i15
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075... 31 1.3
01_07_0384 + 43209423-43210241 30 1.7
01_06_0715 + 31416338-31416500,31416601-31416710,31416808-314168... 30 1.7
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 29 5.1
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754... 28 6.7
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 28 6.7
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 28 6.7
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 28 6.7
04_01_0279 + 3743025-3745169 28 6.7
10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101... 28 8.8
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 28 8.8
03_06_0238 - 32570222-32570330,32570538-32570599,32570658-325708... 28 8.8
>09_04_0717 +
19706160-19706327,19707036-19707157,19707408-19707510,
19707644-19707734,19707960-19708132,19708534-19708622,
19708995-19709085,19709272-19709361,19709807-19709854,
19710033-19710104,19710181-19710274,19710350-19710494,
19710809-19710951,19711601-19711751,19712276-19712449,
19712799-19712874
Length = 609
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 484 ETKCAYCEFVLCDSCLHTCAGCEQVYCNKC 573
E C C F C + +CAGC YC++C
Sbjct: 131 ELTCGIC-FEGCAANAMSCAGCSHFYCHEC 159
>01_07_0384 + 43209423-43210241
Length = 272
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +1
Query: 472 GVTSETKCAYCEFVLCDSCLHTCAGCEQVYCNKCLFVG----SEGSEICVSC 615
G+ CA C + H C C +VYC +C+ G +EG + C+ C
Sbjct: 100 GIPHSNICALCNSYIY-LFRHRCLVCGRVYCRRCVGAGMGDMTEGRK-CIDC 149
>01_06_0715 +
31416338-31416500,31416601-31416710,31416808-31416880,
31416988-31417135,31417867-31418133,31418234-31418576,
31418665-31418802,31419389-31419514,31419626-31419838,
31419918-31420164,31420247-31420446,31420538-31420891,
31420984-31421568
Length = 988
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 469 CGVTSETKCAYCEFVLCDSCLHTCAGCEQVYCNKC 573
CG + C C + LC +CL A + C +C
Sbjct: 11 CGDDAHAACRACSYALCKACLDEDAAEGRTTCARC 45
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 28.7 bits (61), Expect = 5.1
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Frame = -1
Query: 575 KHLLQ*TCSQPAQVWR-----HESHSTNS--QYAHLVSDVTPQ*QFFLIDWVSI-RQPEC 420
+ L Q TC A++WR HES S++S ++ ++S VT Q + D S R PE
Sbjct: 184 RRLYQVTCEDMARIWRERKDTHESSSSSSSGRFIDVLSMVTKLFQLHVDDPTSASRTPER 243
Query: 419 SRLPSLPINN 390
+L ++ +N
Sbjct: 244 KKLAAMLRDN 253
>10_08_0259 +
16274430-16274747,16275180-16275242,16275329-16275424,
16275526-16275618,16276415-16276605,16276684-16276921,
16277805-16277900,16278324-16278404,16278532-16278939,
16279048-16279331,16279460-16279547,16279630-16279830,
16280032-16280118,16280119-16280238,16280536-16280708,
16281914-16282055,16282292-16282414,16282601-16282656,
16282735-16283038,16283154-16283283,16283491-16283549,
16283829-16284061,16285480-16285527,16285765-16285843,
16285925-16286169,16286338-16286722
Length = 1446
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 499 YCEFVLCDSCLHTCAGCEQVYCNKCLF--VGSEG 594
YC + + L +C+ C+ ++C CL G EG
Sbjct: 535 YCTWCVKSEQLQSCSSCKLLFCRNCLSKNFGEEG 568
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 469 CGVTSETKCAYCEFVLCD 522
CGVTSE + A C+ V+CD
Sbjct: 262 CGVTSEGETAKCKKVVCD 279
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 469 CGVTSETKCAYCEFVLCD 522
CGVTSE + A C+ V+CD
Sbjct: 267 CGVTSEGETAKCKKVVCD 284
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 469 CGVTSETKCAYCEFVLCD 522
CGVTSE + A C+ V+CD
Sbjct: 267 CGVTSEGETAKCKKVVCD 284
>04_01_0279 + 3743025-3745169
Length = 714
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Frame = -1
Query: 575 KHLLQ*TCSQPAQVWR-----HESHSTNS--QYAHLVSDVTPQ*QFFLIDWVSI-RQPEC 420
+ L Q TC A++WR HES S++S ++ ++S VT Q + D S R PE
Sbjct: 537 RRLYQVTCEDMARIWRERKDTHESSSSSSSCRFIDVLSMVTRLFQLHVDDPTSASRTPER 596
Query: 419 SRLPSLPINN 390
+L ++ +N
Sbjct: 597 KKLAAMLRDN 606
>10_01_0078 -
1012031-1012084,1012998-1013105,1013610-1013661,
1013926-1016603
Length = 963
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 583 LQTSICYSKPAHNQRRCGDMNHIVQIHN 500
L + Y+ +NQ R GD+NH +Q+ N
Sbjct: 754 LPNHVTYTILMNNQIRLGDINHAIQLFN 781
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +1
Query: 313 GAKKGTTTETNNNLQDSKVRKDKKKQLFIGKDGNLLHSGC-LIETQSIRKNCHCGVTSET 489
GAK G TN + + + KK Q + D N + +GC +R + G+
Sbjct: 407 GAKGGIKKSTNRRIAERILMSVKKGQQEMSPDSNSIVNGCHWPRDMKLRSDTRSGIKDSV 466
Query: 490 KCAYC 504
+ C
Sbjct: 467 VSSQC 471
>03_06_0238 -
32570222-32570330,32570538-32570599,32570658-32570883,
32571165-32571532,32571644-32571743,32571817-32571879,
32573077-32573123,32573222-32573353
Length = 368
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +1
Query: 493 CAYCEFVLCDSCLHTCAGCEQVYCNKCLFVGSEGSEICVSCY 618
C+ C CD+ T C+ Y +C+ + S C C+
Sbjct: 30 CSICLEAFCDNDPSTVTSCKHEYHLQCILEWCQRSSQCPMCW 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,474,455
Number of Sequences: 37544
Number of extensions: 321190
Number of successful extensions: 736
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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