Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4i14
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    27   3.0  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   4.0  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    25   9.2  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   9.2  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.2  

>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 17  FFGSVCTTAVRMYFVVLQSILNYKLIMSL 103
           F+G+  T + R+  +++Q I+NY  ++SL
Sbjct: 409 FYGASLTKSFRVKPLIVQDIINYPYLLSL 437


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 561 FWSDSWMRYFFTDLSCESIW 502
           FW D   RY FTD S  + W
Sbjct: 216 FWVDYMSRYTFTDFSITTNW 235


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 400 TASQYVGKPIMCIVNGIPANVVNTFCWITSTFT-MPDAFAREVGKEVAHPGVGPEFEGTE 576
           T S +V KP M ++  IPA +    C+ T +F  + D  AR    EV  P      E   
Sbjct: 205 TISNFVPKPFMSLMAFIPAYL--EVCFRTCSFVYVRDPVARPGLTEVPSPFP----EDLH 258

Query: 577 KKYYTYY 597
              YTYY
Sbjct: 259 ALAYTYY 265


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 555 SDSWMRYFFTDLSCESIWHCER*R---DPTERIDHI 457
           S++W  Y+F DLS  ++ + +  R   DP +   HI
Sbjct: 548 SNNWAYYYFRDLSFPAVMYIDYIRIYQDPDDTNSHI 583


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 251 LQEYSHVLECILNYH*YQSCFNAKWR 174
           L  ++  LEC +N+H   SCF+  WR
Sbjct: 353 LNFFTFPLECAINFHIDCSCFD-DWR 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,555
Number of Sequences: 5004
Number of extensions: 58281
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)