Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4i14
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951...    32   0.33 
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496...    30   1.8  
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767...    29   4.1  
12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325...    28   7.2  
11_08_0067 - 28135216-28135728                                         28   7.2  
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    28   7.2  

>04_04_0739 -
           27693768-27694305,27694765-27694912,27694987-27695188,
           27695802-27695864,27695865-27696120,27697811-27697953
          Length = 449

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -3

Query: 581 FFSVPSNSGPTPGCATSLPTSLAKASGIVNVDVIQQ-NVLTTFAGIPLTIHIIGFPTYCD 405
           FF +P    P  G    L  + + +S ++NV ++    VLTT+ GI   + ++ FP Y +
Sbjct: 336 FFLIPRTVHPLLGWPLYLLGAFSFSSIVINVFLLHPLAVLTTWLGIIGALFVMAFPWYLN 395

Query: 404 AVI 396
            V+
Sbjct: 396 GVV 398


>02_05_1147 -
           34447519-34448042,34448126-34449092,34449458-34449657,
           34449867-34450051,34450130-34450228,34450316-34450357,
           34450516-34450860,34450956-34451101,34451213-34451296,
           34451424-34451502,34451596-34451675,34451824-34451875,
           34451992-34452026
          Length = 945

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 569 PSNSGPTPGCATSLPTSLAKASGIVNVDVIQQNVLTTFAGIPL 441
           P    P P  A++ P S A      N   I QNV T FA + +
Sbjct: 588 PQAGAPYPQAASTFPHSQASHPAATNPSTIPQNVATPFAPLQM 630


>01_01_0972 +
           7672048-7672390,7672546-7672709,7672864-7672961,
           7673040-7673361,7674021-7675220
          Length = 708

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 349 LHNVFTTVLLLTCSMIITASQYVGKPIMCIVNGIPANVVNTFCWI 483
           +H+  T  L LT  + + ASQ +G  + C+VN  PA V   F W+
Sbjct: 487 MHDFKTAYLTLTSPVSMFASQAIGTALGCVVN--PA-VFLAFRWL 528


>12_02_0797 -
           23230441-23230757,23230922-23231069,23231352-23232562,
           23232639-23232894,23234073-23234309
          Length = 722

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 247 CR*INKRIKMFQLLGGLRVYFQYQPIRTDNAVFRLHNVFTTVLLLTCSMIITASQYVGK 423
           C  I KR  +F L GG+         +T+ +    +N+   +LLL   MII    Y+GK
Sbjct: 237 CTRIQKRFAVFLLYGGVEASPPSLASQTEGSYVPKNNLEEAILLL---MIILKKWYLGK 292


>11_08_0067 - 28135216-28135728
          Length = 170

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 217 RIHSKT*EYSCR*INKRIKMFQLLGGLRVYFQYQPIRTD 333
           R+H     + CR   +R   FQ LGG R   +   +R D
Sbjct: 37  RVHLDGGAFQCRTCGRRFSTFQALGGHRTSHKRPRVRAD 75


>11_01_0466 +
           3607947-3610608,3610725-3611018,3611494-3611895,
           3611984-3612217,3614113-3614138,3614446-3614633,
           3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -3

Query: 533 SLPTSLAKASGIVNVDVIQQN 471
           +LP+SLA AS +V++D+ Q N
Sbjct: 279 NLPSSLANASNLVDLDISQNN 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,518,655
Number of Sequences: 37544
Number of extensions: 323389
Number of successful extensions: 778
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)