Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4i12
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882           32   0.43 
09_06_0133 - 21053851-21053863,21053920-21054017,21054198-210543...    30   1.7  
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623     29   4.0  
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997...    29   5.3  
03_06_0728 + 35768830-35769324,35769404-35769462,35770440-357705...    28   7.0  
02_04_0474 - 23202739-23203011,23203103-23203469,23203592-232039...    28   7.0  
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626...    28   9.2  

>08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882
          Length = 785

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 469 NFGNSIAISGLFVPEIGHIRFGVVAANPGVCPAKAP 362
           ++ N +A++  F+   GHI FGV AA P   P  AP
Sbjct: 123 SYDNLVAVAHGFLAREGHINFGVSAAFPASPPPDAP 158


>09_06_0133 -
           21053851-21053863,21053920-21054017,21054198-21054356,
           21054608-21054710,21056053-21056342
          Length = 220

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 152 SPCRLAHCRCFPRTFHSSHP-PTPYSSNYFIHCHA 51
           +P RLA  R  PR     HP P PY +N F+ C A
Sbjct: 74  APLRLAVDRYAPRVSLIVHPFPLPYHTNSFLACRA 108


>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
          Length = 400

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = -3

Query: 173 YSCCRSRSPCRLAHCRCFPRTFHSSHPPTPYSSNYFIHCHAKITI 39
           YS C SR  C    C C P       PP  + S Y +  H  I I
Sbjct: 354 YSFCCSRILCGTCGCPCDPPAVVVLPPPEFFGSVYLLVIHQPIEI 398


>10_08_0911 -
           21499196-21499236,21499368-21499488,21499665-21499789,
           21500187-21500418,21500488-21500668,21501342-21501438,
           21501641-21501779,21502024-21502351,21502890-21503137,
           21503270-21503543,21504200-21504291,21504451-21504521,
           21505091-21505181,21506526-21507380,21507482-21507594,
           21508007-21508074,21508655-21508835,21509084-21509186,
           21509273-21509379,21510046-21511584,21511661-21511771,
           21511856-21511908,21511988-21512063,21512147-21512366,
           21512477-21512901,21513193-21513372,21513503-21515474
          Length = 2680

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 95  GVKSEKCEENNGNVPDGKANGIDNKSKQV 181
           G  SEK E+NNG VP    NG+D+   Q+
Sbjct: 691 GASSEKGEQNNGKVP---LNGMDDSGVQL 716


>03_06_0728 +
           35768830-35769324,35769404-35769462,35770440-35770509,
           35770626-35770748,35770836-35770964,35771268-35771717
          Length = 441

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 393 PIPECAQPKRRARDVEPRAARKR 325
           P PE A+P  ++R  EPR  RKR
Sbjct: 50  PEPEVAEPSAKSRRDEPRRKRKR 72


>02_04_0474 -
           23202739-23203011,23203103-23203469,23203592-23203990,
           23204060-23204397,23204558-23204782,23205025-23205073,
           23205281-23205462
          Length = 610

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 335 AALGSTSRARRFGWAHSGIGGH 400
           AALG   R   +GW H+G  GH
Sbjct: 446 AALGDDGRVCTWGWGHTGCLGH 467


>03_05_0105 -
           20861130-20861384,20861472-20862262,20862364-20862618,
           20862713-20862827,20862959-20863011,20863113-20863373,
           20863699-20863749,20863863-20864114,20864504-20864726,
           20865317-20865460
          Length = 799

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = -1

Query: 208 NELIFLNVQYLFTLVVDPVRLAVWHIAVVFLALFTLHTLQRHIQAITLFTVMQKLQY 38
           +E+  + V  + TL++  V L VW I ++++ALF +       +A+ L +V+ K  +
Sbjct: 451 HEICVILVMIITTLLMTIVMLLVWKINILWVALFFITFTS--TEAVYLSSVLYKFTH 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,365,609
Number of Sequences: 37544
Number of extensions: 352722
Number of successful extensions: 956
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)