Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4i12
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    28   0.082
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.1  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 0.082
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 129 PLFSSHFSLFTPSNAIFKQLLYSLSCKNYNTCSY 28
           PLF+   SLF  +NA++  ++Y +S   Y    +
Sbjct: 310 PLFTIWGSLFAKANAVYNPIVYGISHPKYRAALF 343


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 109 FTLHTLQRHIQAITLFTVMQKLQYLLLFVGTSNFIS 2
           +TL    R I    +      +Q + L VG SNF+S
Sbjct: 206 YTLRNYGRRINCTYVALYPSSVQVIALGVGVSNFLS 241


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 636 ADSPIVTLRKNIKNLAWY 583
           AD   VT +KNI  L W+
Sbjct: 27  ADKTYVTRQKNIYELFWH 44


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 636 ADSPIVTLRKNIKNLAWY 583
           AD   VT +KNI  L W+
Sbjct: 27  ADKTYVTRQKNIYELFWH 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,299
Number of Sequences: 438
Number of extensions: 4079
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)