Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4i05
         (301 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.46 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   5.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   5.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   5.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   7.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   7.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          20   7.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   7.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 0.46
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
 Frame = -3

Query: 143 APPLHHHSQ-QTKHH---TPFLHFS 81
           A P HHHS   T HH   TP  H S
Sbjct: 428 ATPHHHHSHAATPHHQHSTPLAHSS 452


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 97   HFFISLLIVSTRCEGSIQN 41
            HF  S  ++S +CEG   N
Sbjct: 1622 HFVASYALISNQCEGDSLN 1640


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 146 VAPPLHHHSQQTK 108
           + PP HHH  QT+
Sbjct: 347 MGPPHHHHHHQTQ 359


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 198 TGLGTCSLSIFDA 160
           TGLG C   IF A
Sbjct: 157 TGLGNCLTKIFKA 169


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 198 TGLGTCSLSIFDA 160
           TGLG C   IF A
Sbjct: 157 TGLGNCLTKIFKA 169


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = -3

Query: 131 HHHSQQTKHH 102
           HHH Q   HH
Sbjct: 141 HHHLQNHHHH 150


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +3

Query: 33  WVLFWILP 56
           W+ FWI P
Sbjct: 232 WIAFWIKP 239


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 33  WVLFWILP 56
           WV FWI P
Sbjct: 263 WVSFWIKP 270


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 140 PPLHHHSQQTKH 105
           PPLH H+    H
Sbjct: 102 PPLHPHTAMVTH 113


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 149 TSDIASNILNEQVPKPVSSNYVNST 223
           TS + SN+   Q   PV+ N    T
Sbjct: 532 TSSVNSNLTVNQTVNPVAINIPGDT 556


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,048
Number of Sequences: 438
Number of extensions: 1484
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)