Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4i03
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    29   0.41 
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    28   0.95 
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    28   1.3  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    27   2.9  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   3.8  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   3.8  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   5.1  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   6.7  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.8  

>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = -2

Query: 558 YTSHVKFNFCKDEGIRCIKHGRVVGLLVGFDCILSRVDHPFVILHRIHIVDGYRFVLITE 379
           Y + +KF  C D+ I   ++   + + +G +  L +VD    +L + + + G R++ +T 
Sbjct: 114 YNNDLKFVDCADDAIAAFRNNGKIAIALGVEG-LHQVDTSLAVLRQYYSL-GVRYITLT- 170

Query: 378 MLVHHCFN 355
              H+C N
Sbjct: 171 ---HNCDN 175


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 400 IPIDDVYPMKYYKWVVYTAEDAVKAHQETHHPTMFNA-PDAFIFAKIEFNMTGIKQTRFM 576
           +P+ ++YP    + +  TA+ A K   E+H+   F    + F F +    ++ +K+  ++
Sbjct: 392 VPVQEIYPTAPSEVLSSTADPAAKGKIESHYHGAFGGIEEVFTFTRCLSRLSEMKKQSWI 451

Query: 577 DS 582
            S
Sbjct: 452 HS 453


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 154 WLSRFYLYDFRFIYSFNFVLCIFY-GPNVV 68
           W    ++ DFR  Y+F  + C+F  GP V+
Sbjct: 379 WFFSLFIKDFRLDYAFRILDCLFVNGPRVL 408


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 343 GRKVVKTV-VNKHFSDEHKAIPIDDVYPMKY 432
           G+K +  V +  H ++  +AIP DD+  MKY
Sbjct: 307 GQKAITGVMIESHLNEGKQAIPEDDLSSMKY 337


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 233 FMDLIVVIFLWAEVVLVKSKRKIVPAMV 150
           F+D +VVIFL      V+++R + PA V
Sbjct: 31  FLDYVVVIFLTVVAFCVRAQRLMNPAKV 58


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 493 PTMFNAPDAFIFAKIEFNMTGIKQTRFMDSFTRLSLLPHP 612
           PT+  + D  ++ ++E + T    T F D  + L ++ HP
Sbjct: 89  PTLLTSVDPVLYQQLEASSTNDISTVFEDESSSLPIILHP 128


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -3

Query: 602 SKDKRVKLSMNRVCFIPVMLN---SIFAKMKASGALNMVGWWVSWW 474
           S+  ++ L  +R  + P+ L+   SIFA+     A++  G++V +W
Sbjct: 24  SETSKIDLRRSRAAYRPLELSPTPSIFARNYQRNAVDFTGFFVLFW 69


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 306 FNLNFFCTCLSSCTFSGCVEYRSCVYGSNSCNIFVG*SGIGQKQTE 169
           F L F    +S     GC+   S +   N  ++F G SG+  K ++
Sbjct: 182 FRLGFLDALVSPVLLRGCILSISMIIMINQGSVFFGFSGVKYKGSD 227


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 498 HV*CT*CLHLCKN*I*HDWY 557
           H+ C  C H C N +  DW+
Sbjct: 547 HILCDYCKHKCSNIMEQDWF 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,255
Number of Sequences: 5004
Number of extensions: 53240
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)