Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4i03
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1698 + 28803971-28804534,28804614-28804696,28804780-288049... 30 1.7
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112... 30 1.7
07_01_0185 - 1313472-1313480,1313674-1313710,1314150-1314379,131... 29 2.3
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 28 5.2
06_01_0448 - 3162059-3162092,3162636-3162763,3163556-3163597,316... 28 5.2
08_02_0574 - 18867623-18868033,18869751-18870209 28 6.9
04_04_0819 - 28312667-28313219,28315157-28316430 27 9.1
01_06_0338 + 28538951-28538966,28539073-28539183,28539311-285394... 27 9.1
01_01_0355 + 2810340-2813112,2813213-2813637 27 9.1
>07_03_1698 +
28803971-28804534,28804614-28804696,28804780-28804900,
28804982-28805155,28805245-28805349,28805439-28805765
Length = 457
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 462 ILSRVDHPFVILHRIHIVDGYRFVLITEML-VHHCFNYLSPSLIVRNE 322
IL++VDHPFV+ R YR L+ + + H F L + R E
Sbjct: 171 ILTKVDHPFVVQLRYSFQTKYRLYLVLDFINGGHLFFQLYKQGLFREE 218
>03_02_0909 -
12310460-12310759,12310882-12310989,12311099-12311272,
12311370-12311490,12311569-12311651,12311754-12312420,
12314073-12314440
Length = 606
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 462 ILSRVDHPFVILHRIHIVDGYRFVLITEML-VHHCFNYLSPSLIVRNE 322
IL++VDHPFV+ R YR L+ + + H F L + R E
Sbjct: 328 ILTKVDHPFVVQLRYSFQTKYRLYLVLDFINGGHLFFQLYQQGLFREE 375
>07_01_0185 -
1313472-1313480,1313674-1313710,1314150-1314379,
1314774-1314899,1315009-1315050,1315227-1315367
Length = 194
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 236 QERYSTQPEKVQELRHVQKKFKLKSQKLVSFRT 334
+E+ Q E+V+ +RH+Q FK + K +RT
Sbjct: 93 REKSEDQRERVERIRHMQDMFKKERSKCRDYRT 125
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 527 KMKASGALNMVGWWVSWWAL 468
+ K + AL +V WW WWA+
Sbjct: 6 RAKVAAALGVVVWWWWWWAV 25
>06_01_0448 -
3162059-3162092,3162636-3162763,3163556-3163597,
3163697-3163738,3163960-3164059,3164132-3164193,
3165085-3165169,3168003-3168187
Length = 225
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 276 SSCTFSGCVEYRSCVYGSNSC 214
SSC + YRSC Y NSC
Sbjct: 60 SSCMYKTLERYRSCNYNLNSC 80
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -2
Query: 435 VILHRIHIVDGYRFVLITEMLVHHCFNYLSPSLIVRNETNFCDFNLNFFCTCL 277
+I H H R V T + C L P R + C+F+++ FC+ L
Sbjct: 1 MITHHDHPQHKLRLVTTTCDMPFRCDGCLEPGYAPRYRCDACNFDMHTFCSNL 53
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -3
Query: 620 LGKG*GSKDKRVKLSMNRVCFIPVMLNSIFAKMKASGALNMVGWWVSW 477
LG G S ++ L +N +PVM+N ++ + WW+ W
Sbjct: 294 LGTGWLSVTVQLGLCINLFFTMPVMMNPVYEVAERLLCRKRYAWWLRW 341
>01_06_0338 +
28538951-28538966,28539073-28539183,28539311-28539479,
28540841-28541063,28541148-28541204,28541718-28541861,
28541939-28542019,28543026-28543113,28543579-28543943,
28544011-28544086,28544174-28544367,28544846-28545009,
28545080-28545152,28545237-28545350,28545839-28545919,
28546043-28546102,28546180-28546289,28546325-28546501,
28546599-28546683
Length = 795
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 462 ILSRVDHPFVILHRIHIVDGYRFVLITEMLVHHCFNYLSPSLIVRNETNFCDFN 301
++ V +P VI +H+V + F + + HC L+ +L VR + D N
Sbjct: 406 LMDEVGYPLVIFE-VHVVPAHMFRKVISITKSHCKLGLTATL-VREDERITDLN 457
>01_01_0355 + 2810340-2813112,2813213-2813637
Length = 1065
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 531 CKDEGIRCIKHGRVVGL-LVGFD 466
C EG+ C +HGRVV L L G D
Sbjct: 64 CSWEGVACGRHGRVVALSLPGHD 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,998,058
Number of Sequences: 37544
Number of extensions: 337642
Number of successful extensions: 821
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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