Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4h22
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 311 6e-86
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||... 28 1.5
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.6
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 6.1
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 25 8.1
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 25 8.1
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 25 8.1
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 25 8.1
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 311 bits (764), Expect = 6e-86
Identities = 143/196 (72%), Positives = 170/196 (86%), Gaps = 1/196 (0%)
Frame = +2
Query: 128 Y*ISDEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 307
Y ++D LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6 YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65
Query: 308 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 484
L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L FP GKP
Sbjct: 66 LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125
Query: 485 LNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVNDSV 664
LNMILDDGGDLT LVH ++P+LL D++GI+EETTTGVHNLYKMF+E LKVPAINVNDSV
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDSV 185
Query: 665 TKSKFDNLYGCRESLL 712
TKSKFDNL+GC+ESL+
Sbjct: 186 TKSKFDNLFGCKESLV 201
>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/83 (28%), Positives = 38/83 (45%)
Frame = +2
Query: 134 ISDEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLI 313
+SD +++ +++ L E++ A R + A AKI +G + +Q V I
Sbjct: 184 VSDVAISQSTIQQVALMEEQGEDEQAIRHERAVAKIAEGIIELAQMFQDLQVLV-----I 238
Query: 314 ELGAEVQWSSSNIYSTQDEAAAA 382
E GA V NI TQ A +A
Sbjct: 239 EQGALVDRIDFNIEQTQVHAKSA 261
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 618 RNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKIILRGF 478
RN+L++ CT + + F++ G L + K VK P + + + RGF
Sbjct: 282 RNLLFE-CTEQEL-----YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +1
Query: 169 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 348
R+Y R ++PY S SS S ++ STNS N SR T + +
Sbjct: 90 RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149
Query: 349 H 351
H
Sbjct: 150 H 150
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 512 DLTNLVHTKYPDLLKDVKG 568
D N + TK+P ++KDV+G
Sbjct: 376 DRLNKLQTKFPHVMKDVRG 394
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 479 KPLNMILDDGGDLTNLVHTKYPDLLK-DVKGI--TEETTTGVHNLYKMFRE 622
K +N + G++ + P LK V GI ++ +G HN+YK FR+
Sbjct: 45 KMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRD 95
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 219 RRHAIRPGISFSANIISFRPHSANFSS 139
R A++PG + +I +RP NF+S
Sbjct: 31 RERAVKPGYTAPEDIKRYRPGRGNFAS 57
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 479 KPLNMILDDGGDLTNLVHTKYPDLLK-DVKGI--TEETTTGVHNLYKMFRE 622
K +N + G++ + P LK V GI ++ +G HN+YK FR+
Sbjct: 45 KMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRD 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,390
Number of Sequences: 5004
Number of extensions: 64498
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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