Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4h18
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z81056-1|CAB02902.1|  319|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical
           protein C32B5.14 protein.
          Length = 392

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +1

Query: 190 IKYVRRLYPLASRWNTIKNLHLGINRPVYSITSYVTNLQNSF 315
           I+Y+ +L+PL  ++ TIK+ H+ +NR  + +   + N  N+F
Sbjct: 34  IQYLEKLFPLHVKYLTIKSDHITVNRTTFQLK--ICNKYNNF 73


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 147 YSCIFNILFHTINNFPFC*MIIQN*M*KTEILKVKYSHLVYIC 19
           Y+CIF + FH I N PF   + +      +ILK     LV++C
Sbjct: 156 YNCIFYLSFHDIVNAPF--QLFKAEHFFNDILKGSLLLLVFVC 196


>Z81056-1|CAB02902.1|  319|Caenorhabditis elegans Hypothetical
           protein F09F3.1 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -2

Query: 261 NTQMQIFYCIPTTC*RIQSPYIFNWNSHLAPMAIMLLFYSCIFNILFHTINNF 103
           +T + IF  IP  C  +  P +F W S L P A+    Y    N     I NF
Sbjct: 149 DTALAIF-SIPEGCGFVFDPNLFIWRSELYPCALDRSEYLPYINFSATIITNF 200


>U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical
           protein C01B10.10 protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 593 YLKSFSSNVGSHTFLNTLKSILIINHLIGF 504
           Y+KS   N GSH F+  +  I++I  L+GF
Sbjct: 529 YVKSLEKNDGSHEFIGII--IVLIIFLVGF 556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,613
Number of Sequences: 27780
Number of extensions: 338845
Number of successful extensions: 857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)