Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4h11
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    30   0.39 
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   8.3  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    25   8.3  

>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = +2

Query: 524 FHDKGTSILTSTMKQLYYVLI----CKERQSFIQVYHSS--FDLMSQSDVDYIYW 670
           + D G ++  S ++ LYY+ +     ++   F  ++  S   +    SD+DY YW
Sbjct: 245 YFDSGYNLTVSDVRSLYYICVYEIALRDNSDFCSLFTPSEFLNFEYDSDLDYAYW 299


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 575 YVLICKERQSFIQVYHSSFDLMSQSD 652
           Y+++ KE++SFI +   +FD +  SD
Sbjct: 589 YLVLSKEKESFIFLAGETFDEVQHSD 614


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 547 PNFYYEAVVLRPDLQGKTIVYTSLPFKFR 633
           P+F   +  LR  LQ KTI+   L F+FR
Sbjct: 16  PHFNSTSSFLRKRLQSKTILSKRLGFQFR 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,249
Number of Sequences: 5004
Number of extensions: 51570
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)