Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4h11
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.8  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 297 PADGESYNGKTYVTEIR 347
           P D + +NGKT+VT +R
Sbjct: 67  PIDVDRWNGKTFVTILR 83


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = +3

Query: 633 ISCLKVMWTISIGCVTYNN 689
           ISCL ++ T+++ C+ +++
Sbjct: 522 ISCLGIVATMAVACLLFHH 540


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 713 CRRIHESSVIIRNTANRYSPHHF 645
           C  IH + V  R+  N Y  H F
Sbjct: 573 CEMIHNAQVNKRSIHNNYPVHTF 595


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = +3

Query: 633 ISCLKVMWTISIGCVTYNN 689
           ISCL ++ T+++ C+ +++
Sbjct: 612 ISCLGIVATMAVACLLFHH 630


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,561
Number of Sequences: 438
Number of extensions: 3972
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)