Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4h08
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    29   0.94 
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    29   0.94 
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   2.2  
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    27   2.9  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   3.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   5.0  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.6  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.6  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   6.6  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    25   8.8  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   8.8  

>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 570 ELVNLYKSH-QIRKLSEDDSSRAYFEYSALLGD 665
           E+ N+ KSH QI +L +DD   A+  Y+A L D
Sbjct: 91  EVDNMAKSHLQISQLLQDDVENAFTRYAASLKD 123


>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 537 SDPRALSNVIFELVNLYKSHQIRKLSEDDSSRAYFEYSALLGDSL 671
           SDP A+  +     N  KS Q   +++   +R Y E S+L GD +
Sbjct: 126 SDPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGV 170


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +3

Query: 438 FAPDFKFDDESFLISEDENFLEEKVPSLAKWNESDPRALSNVIFELVNLYKSHQ 599
           F P+ +    S    +  +++E  +    +WN+    AL N I  L+ ++ + Q
Sbjct: 628 FTPENQLSLRSMACEKAASYIENLILYKIQWNDYGAMALENDISSLITIFSNDQ 681


>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 387 CSKKLKWEILFDVSIPWFAPDFKFDDESFLISEDENFLEEKVPS 518
           C+K     +LF    P F   + F+D SF   + ++F+E+K PS
Sbjct: 199 CTKNYYTRLLF----PEFPNVYAFNDLSFHFHDAQSFVEKKQPS 238


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 360 CQFRLLLPYCSKKLKWEILFDVSIPWFAPDFKFDDESFL 476
           C FR+LL Y  ++  WE+L  +    F     +D   F+
Sbjct: 604 CFFRMLLIYFKREFDWEVLLKLWDVLFTNYLSYDYHIFV 642


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 465 ESFLISEDENFLEEKVPSLAKWNES 539
           E  L   DEN L     +L+KWNE+
Sbjct: 18  EIILAHSDENLLSRTKNNLSKWNEN 42


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
 Frame = +3

Query: 6   LYSVDTVPTYLEIVKLDQEFLRLLM*ICYYRYFEIEFSKYKVILS*QFMDXXXXXXXXXX 185
           L+S  TV + L+++K     +R L+  C++   ++   +YKV  + +  D          
Sbjct: 58  LFSFKTVYSLLKLIKT---LIRKLL-YCFHYALDLFADEYKVTANDKHYDYRLKSHRIKD 113

Query: 186 XXELPKKTKMGTEAFG--YF--KNLS---PAFRPYVQTLCEELKLGLCKTKIDVERISCL 344
             ++  K K  T+ F   +F  KN     P+F   + T+   L++     KI   +++C 
Sbjct: 114 --KITTKCKGTTKYFNSRHFEIKNAVENLPSFSSNLTTIGNNLRIFWKNGKIRCIKLTCT 171

Query: 345 PDGEECQF 368
           PD E   F
Sbjct: 172 PDAEIVNF 179


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 411 FPISIS*NNKVIADGIGIPLHQVNKIFFQH 322
           F + +   +K+    + IPLHQ   +F  H
Sbjct: 415 FAVPLKEEHKIFLSKVLIPLHQTKSVFLYH 444


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 459 DDESFLISEDENFLEEKVPS 518
           DD S +++EDEN + +++PS
Sbjct: 377 DDMSNVVNEDENLIIDEIPS 396


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +3

Query: 261 RPYVQTLCEELKLGLCKTKIDVERISCLPDGEECQFRLLLPYCSKKLKWEIL 416
           RP  +      K       I     + LP GE+   ++  P  +K++ W++L
Sbjct: 171 RPVEEVFASIEKRAAASASIAQVHRAVLPSGEKVAVKIQKPDVAKQMSWDLL 222


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 375 LLPYCSKKLKWEILFDVSIPWF 440
           L P   K L +++ F+V IPWF
Sbjct: 197 LNPRLGKLLDFKMFFEVRIPWF 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,578
Number of Sequences: 5004
Number of extensions: 63953
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)