Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4h08
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1397 - 29861108-29861206,29861683-29861748,29862066-298621... 62 6e-10
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434... 30 1.7
09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635... 30 2.3
09_04_0723 + 19736958-19737107,19737979-19738480,19738911-197390... 29 5.2
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 29 5.2
09_04_0615 + 18972227-18972250,18972293-18972397,18973492-189735... 28 6.9
>06_03_1397 -
29861108-29861206,29861683-29861748,29862066-29862155,
29862604-29862652,29862820-29862950,29863989-29864087,
29864169-29864204,29864467-29864557,29864814-29864994,
29865063-29865150,29865222-29865335
Length = 347
Score = 61.7 bits (143), Expect = 6e-10
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Frame = +3
Query: 363 QFRLLLPYCSKKLKWEILFDVSIPWFAPDFKF--DDESF--LISEDENFLEEKVPSLAKW 530
+F L +P+C + W+ L++ P APD F DDE F L+ DE EK LA W
Sbjct: 54 RFTLAIPFCLDYVYWDFLYNALSPKVAPDVVFGPDDEGFQPLVDFDETGSGEK-SCLANW 112
Query: 531 NESDPRALSNVIFELVNLYKSHQIRKLSEDDSSRAYFEYSALLGDSLISESNIEVWVGTH 710
+ D AL ++I EL Y +Q ++ +E D +R FE S +L I +
Sbjct: 113 DCRDTSALLSLIKELREFYIEYQKKRAAEVDDARLKFEISTVLSKEGIEVCTVSSNGRPD 172
Query: 711 VVEFLINLM 737
V+F + L+
Sbjct: 173 EVKFAVPLL 181
>07_01_0584 +
4345134-4345237,4346165-4346267,4346397-4346466,
4346552-4346590,4346684-4346801,4346894-4346951,
4347031-4347095,4347281-4347341,4347678-4347779,
4348005-4348070,4348399-4348443,4348540-4348797,
4349289-4349501,4350103-4350411,4350461-4350613
Length = 587
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 489 ENFLEEKVPSLAKWNESDPRALSNVIFELVNLYKSHQIRKLSED-DSSRAYF--EYSALL 659
E+ K+PS+AK+N R + E V K R++S+ SRA F EY+ L
Sbjct: 392 EHLQSLKLPSMAKFNAGFLRCNQSFEMECVGPAKESYERRMSKMLARSRALFIKEYNNKL 451
Query: 660 GDSLISESNIEVWVGTHVVEFLI 728
+ L++ S + + + V++F +
Sbjct: 452 FNWLVTFSLVMIVIARFVIKFFL 474
>09_04_0627 -
19061106-19061474,19062067-19062909,19063395-19063501,
19064301-19064332,19064384-19064663,19065092-19065475,
19066730-19066803,19067244-19067310,19067415-19067486,
19067941-19068000,19068683-19068734,19068874-19068943,
19069110-19069372
Length = 890
Score = 29.9 bits (64), Expect = 2.3
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Frame = +3
Query: 234 YFKNLSPAFRPYVQT--LCEELKLGLCKTKIDVERISCLPDGEECQFRLLLPYCSKKLKW 407
Y K + AFRP L KL LC+ +I + ++CL +L L C +
Sbjct: 620 YLKLVRCAFRPTASLGFLSSLTKLHLCEVRIKDDELTCLISKSLALKQLELLNCRQ---- 675
Query: 408 EILFDVSIPWFAPDFKFDDESFLISEDENFLEEKVPSLAKWNESDPRALSNVIFELVNLY 587
+ + IP + S + E+ +E K P+L+ ++ +SN++ EL +L
Sbjct: 676 --IICLKIPCLLEQLSCLNVS--LCENLQMIESKAPNLSTFS-----YISNLVVEL-SLK 725
Query: 588 KSHQIRKLSED 620
+S Q++ L D
Sbjct: 726 QSSQVKTLDID 736
>09_04_0723 +
19736958-19737107,19737979-19738480,19738911-19739061,
19739659-19739766,19739789-19739818,19739894-19740303,
19740797-19740882,19740989-19741058,19741413-19741585,
19741644-19741725,19742131-19742288
Length = 639
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 531 NESDPRALSNVIFELVNLYKSHQIRKLSEDDSSRAYFEYSALLGDSLISESNI 689
N++D ++ L N Y Q +L+ D+ R + S LGDSL++ SN+
Sbjct: 43 NQADVARQVHMAVILYNYYHRKQFPQLAFADAMRFFKCASLTLGDSLLAYSNM 95
>07_01_0389 -
2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 636 YFEYSALLGDSLISESNIEVWVGTHVVEFLINLMLTLED 752
Y E + LL +S + + +E WVG HV EF + L+D
Sbjct: 607 YDELAVLLENSSLHSAIVE-WVGEHVAEFDTVFLADLDD 644
>09_04_0615 +
18972227-18972250,18972293-18972397,18973492-18973584,
18973887-18973993,18974107-18974157,18974675-18974928,
18975176-18975221,18975896-18976127
Length = 303
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 418 NNISHFNFLEQ*GNSRRNWHSSPSGKQDILSTSILVLQRP-SFNSSHNVCT*GRNAG 251
N I++ LE N+ + HSS + D L + + +Q P S S H+ G G
Sbjct: 94 NTIANSVLLESDANTNKKKHSSTNHDNDQLGVTEIQIQNPCSHRSEHDATRAGEGEG 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,154,859
Number of Sequences: 37544
Number of extensions: 329958
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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