Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4h08
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome as...    31   0.88 
AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog...    31   0.88 
AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.       31   0.88 
U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...    28   8.2  

>AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome
           assembly factor protein6 protein.
          Length = 720

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +3

Query: 408 EILFDVSIPWFAPDFKFDDESFLISEDENFLEEKVPSLAKWNESDPRALSNVIFELVNLY 587
           +++ +V++    P+FKF +    ISED      + PS+AK    +   L  ++      Y
Sbjct: 114 DLVKNVAVDNITPNFKFHETPIPISEDAKLSLMRQPSVAKNIRLEKHHLKQILKSANVFY 173

Query: 588 KSHQIR 605
           K+  IR
Sbjct: 174 KNDVIR 179


>AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog
           protein.
          Length = 720

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +3

Query: 408 EILFDVSIPWFAPDFKFDDESFLISEDENFLEEKVPSLAKWNESDPRALSNVIFELVNLY 587
           +++ +V++    P+FKF +    ISED      + PS+AK    +   L  ++      Y
Sbjct: 114 DLVKNVAVDNITPNFKFHETPIPISEDAKLSLMRQPSVAKNIRLEKHHLKQILKSANVFY 173

Query: 588 KSHQIR 605
           K+  IR
Sbjct: 174 KNDVIR 179


>AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.
          Length = 720

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +3

Query: 408 EILFDVSIPWFAPDFKFDDESFLISEDENFLEEKVPSLAKWNESDPRALSNVIFELVNLY 587
           +++ +V++    P+FKF +    ISED      + PS+AK    +   L  ++      Y
Sbjct: 114 DLVKNVAVDNITPNFKFHETPIPISEDAKLSLMRQPSVAKNIRLEKHHLKQILKSANVFY 173

Query: 588 KSHQIR 605
           K+  IR
Sbjct: 174 KNDVIR 179


>U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical
           protein F10C1.5 protein.
          Length = 280

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 445 GANHGIDTSNNISHFNFLEQ*GNSRRNWHSSPSGKQDILSTS 320
           G NH   T+NN ++     +    +R+  SSP+G + ++STS
Sbjct: 118 GKNHASPTTNNNNNTEEKYEDSQGQRSSPSSPTGSETVVSTS 159


>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 558 NVIFELVNLYKSHQIRKLSEDDSSRAYFEYSALLGDSLI 674
           N+ +E+V  Y+SHQ       D   + F+Y A+  ++++
Sbjct: 104 NIDYEIVGFYQSHQFGAGFSHDLVESMFDYQAMGPENVV 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,093,716
Number of Sequences: 27780
Number of extensions: 335319
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)