Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4h08
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    23   4.1  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   4.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 28/100 (28%), Positives = 41/100 (41%)
 Frame = +3

Query: 447 DFKFDDESFLISEDENFLEEKVPSLAKWNESDPRALSNVIFELVNLYKSHQIRKLSEDDS 626
           D      S   SE+ +F + K P+L    E  P+  ++++   V  YK   I K  + D 
Sbjct: 370 DISSSSSSISSSEENDFWQPK-PTL----EDAPQ--NSLLPNFVG-YKGKHIGKSGKVDV 421

Query: 627 SRAYFEYSALLGDSLISESNIEVWVGTHVVEFLINLMLTL 746
             A  E    + + L   SNI V         L NLM T+
Sbjct: 422 INAAKELIFQIANELEDASNIPVHATLEKFMILCNLMRTM 461


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 50  VRPGIPTPTNVNMLLQVFRNRV 115
           V PG  + TN N +  +F+N +
Sbjct: 69  VAPGTSSATNPNAMKTIFKNTI 90


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 22/100 (22%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
 Frame = +3

Query: 303 LCKTK--IDVERISCLPDGE-ECQFRLLLPYCSKKLKWEILFDVSIPWFAPDFKFDDESF 473
           +CKT+  ID ++ + + +G  + + + +  YC   LK   + D +  +     K   E  
Sbjct: 32  VCKTETGIDQQKANDVIEGNIDVEDKKVQLYCECILKNFNILDKNNVFKPQGIKAVMELL 91

Query: 474 LISEDENFLEEKVPSLAKWNESDPRALSNVIFELVNLYKS 593
           +   DEN +++ V   +  +E +P   ++ + + V+ YK+
Sbjct: 92  I---DENSVKQLVSDCSTISEENPHLKASKLVQCVSKYKT 128


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 725 QKFNDMCSNPNFDVTF 678
           +KF   C  P  D+TF
Sbjct: 221 EKFYTCCDEPYLDITF 236


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 725 QKFNDMCSNPNFDVTF 678
           +KF   C  P  D+TF
Sbjct: 221 EKFYTCCDEPYLDITF 236


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 725 QKFNDMCSNPNFDVTF 678
           +KF   C  P  D+TF
Sbjct: 217 EKFYTCCDEPYLDITF 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,324
Number of Sequences: 438
Number of extensions: 4024
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)