Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4h06
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...   240   1e-64
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...   237   8e-64
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces...    26   5.6  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   7.4  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   9.7  

>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score =  240 bits (588), Expect = 1e-64
 Identities = 117/224 (52%), Positives = 146/224 (65%), Gaps = 4/224 (1%)
 Frame = +2

Query: 2   VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANGQKVMYDLESKINQAV 181
           VAAGVIPSPFEY DIVTTTTHK+LRGPR  +IF+RKG RS    G  ++Y+LE KIN +V
Sbjct: 228 VAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFYRKGTRSHDKRGNPILYELEDKINFSV 287

Query: 182 FPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISRGYSIATGGTDV 361
           FPG QGGPHNH               EF +YQK V+ NA+ +    I+RGY + +GGTD 
Sbjct: 288 FPGHQGGPHNHTITALAVALGQAKTPEFYQYQKDVLSNAKAMANAFITRGYKLVSGGTDT 347

Query: 362 HLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALTTRGLKEA 541
           HL LVDL   G+ GA  ER+LEL +++ NKNTVPGD SAL P G+RLGTPA TTRG  E 
Sbjct: 348 HLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIPRGLRLGTPACTTRGFDEK 407

Query: 542 DIDKVVDFIDRAL----KIGLEIIKVSGLKLVDFNKAIEENAEF 661
           D ++VV+ ID  +    KI    +K    K  DF   + + ++F
Sbjct: 408 DFERVVELIDEVVSLTKKINEAALKEGKSKFRDFKAYVGDGSKF 451


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score =  237 bits (581), Expect = 8e-64
 Identities = 118/223 (52%), Positives = 145/223 (65%), Gaps = 3/223 (1%)
 Frame = +2

Query: 2   VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANGQKVMYDLESKINQAV 181
           V+AGVIPSPFEY D+VTTTTHK+LRGPR  +IFFR+G+R     G  + YDLE KIN +V
Sbjct: 222 VSAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRRGLRKHDKKGNPIYYDLEDKINFSV 281

Query: 182 FPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISRGYSIATGGTDV 361
           FPG QGGPHNH                + EYQ QV+KNA+   E    RGY +A  GTD 
Sbjct: 282 FPGHQGGPHNHTITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEFKKRGYKLAADGTDS 341

Query: 362 HLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALTTRGLKEA 541
           H+ LVD++  G+ GA AERVLEL ++  NKNTVP D SA +PSGIR+GTPA+TTRG KE 
Sbjct: 342 HMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRGFKEQ 401

Query: 542 DIDKVVDFIDRALKIGLEIIK---VSGLKLVDFNKAIEENAEF 661
           D  +VVD+IDRAL     + K       KL DF   + E  ++
Sbjct: 402 DFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGEQY 444


>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +2

Query: 260 EFVEYQKQVIKNAQRLC-----EGLISRGYSIATGGTDVHLALVDL 382
           E +E Q++V+KN QRL      EGL       ++   DVH  +VDL
Sbjct: 152 EKIEMQEKVLKNFQRLQKEFREEGLEFITLDASSSLEDVHSQIVDL 197


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
 Frame = +2

Query: 17  IPSPFE-YCDIVTTTTHKTLRGPRAGVIFFRK----GVRSVKANGQKVMYDLESKINQAV 181
           IP PF  +   +   TH TL  P   +IF       G R  K  G    Y + SK+ + +
Sbjct: 102 IPMPFYLHAKCLKNNTHITLCSPERKIIFRASGGTCGFRKGKRRGYDAAYTICSKVLEQI 161


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 211 VVRSALQAREHSLVYLRFQIVHDLLSVRLD 122
           V +    +RE SL++LR ++   LLS + D
Sbjct: 338 VAKRTFHSREQSLLFLRHKLQSSLLSPKQD 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,302
Number of Sequences: 5004
Number of extensions: 41524
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)