Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4h06
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1066 + 30098780-30098866,30099139-30099225,30099318-300994... 229 2e-60
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631... 215 3e-56
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 210 7e-55
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 193 1e-49
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087... 182 2e-46
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 42 6e-04
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606... 30 1.9
06_01_0102 + 834660-834911,835460-835568,835891-836006,836116-83... 29 3.3
08_02_0959 - 23055078-23055177,23055408-23055985 29 4.4
08_02_0960 + 23058393-23059739 28 7.6
01_06_0157 + 27075179-27075529,27075849-27076043,27077705-270780... 28 7.6
>03_05_1066 +
30098780-30098866,30099139-30099225,30099318-30099439,
30099580-30099656,30100135-30100259,30100497-30100589,
30100840-30100932,30101016-30101213,30101337-30101441,
30101535-30101600,30101808-30101885,30102144-30102233,
30102325-30102448,30102590-30102741
Length = 498
Score = 229 bits (560), Expect = 2e-60
Identities = 109/219 (49%), Positives = 144/219 (65%), Gaps = 1/219 (0%)
Frame = +2
Query: 2 VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANGQKVMYDLESKINQAV 181
VAAGV+PSPF+Y D+VTTTTHK+LRGPR +IF+RKGV+ V G++VMYD E KIN AV
Sbjct: 248 VAAGVVPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKGVNKQGKEVMYDFEDKINAAV 307
Query: 182 FPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISRGYSIATGGTDV 361
FPGLQGGPHNH E+ YQ+QV+ N + + L ++GY + +GGTD
Sbjct: 308 FPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVMSNCAKFAQSLTAKGYELVSGGTDN 367
Query: 362 HLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALTTRGLKEA 541
HL LV+L+ G+ G+ E+VLE +A NKNTVPGD+SA+ GTPALT+RG E
Sbjct: 368 HLVLVNLKSKGIDGSRVEKVLENVHIAANKNTVPGDVSAMLHD--HAGTPALTSRGFVEE 425
Query: 542 DIDKVVDFIDRALKIGLEI-IKVSGLKLVDFNKAIEENA 655
D KV DF D A+ + L++ G KL DF ++ ++
Sbjct: 426 DFAKVADFFDAAVNLALKVKAAAGGTKLKDFVATLQSDS 464
>11_04_0205 +
14860857-14861534,14862585-14862975,14863069-14863170,
14863438-14863682
Length = 471
Score = 215 bits (524), Expect = 3e-56
Identities = 108/220 (49%), Positives = 141/220 (64%), Gaps = 1/220 (0%)
Frame = +2
Query: 2 VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVRSVK-ANGQKVMYDLESKINQA 178
VAA +PFEYCD+VTTTTHK+LRGPRAG+IF+RKG + K + +YD E KIN A
Sbjct: 223 VAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDYEDKINFA 282
Query: 179 VFPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISRGYSIATGGTD 358
VFP LQGGPHNH F Y KQV NA + + L+S+GY + T GT+
Sbjct: 283 VFPSLQGGPHNHQIAALAVALQQTMTPGFKAYAKQVKANAVAIGKYLMSKGYKMVTDGTE 342
Query: 359 VHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALTTRGLKE 538
HL L DLR +GL G E++ +LCS+ NKN V GD SAL P G+R+GTPA+T+RGL E
Sbjct: 343 NHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSALAPGGVRIGTPAMTSRGLVE 402
Query: 539 ADIDKVVDFIDRALKIGLEIIKVSGLKLVDFNKAIEENAE 658
D +++ +F+ +A+ I L I K G L DF+K + N +
Sbjct: 403 KDFEQIGEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKD 442
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 210 bits (513), Expect = 7e-55
Identities = 104/220 (47%), Positives = 141/220 (64%), Gaps = 1/220 (0%)
Frame = +2
Query: 2 VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVRSVK-ANGQKVMYDLESKINQA 178
VAA +PF+Y D+VTTTTHK+LRGPR+G+IF+RKG++ K + +YD E +IN A
Sbjct: 176 VAAQEAANPFQYSDVVTTTTHKSLRGPRSGMIFYRKGLKPPKKGQPEGALYDYEDRINFA 235
Query: 179 VFPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISRGYSIATGGTD 358
VFP LQGGPHNH F Y KQV NA L L+S+GY + T GT+
Sbjct: 236 VFPSLQGGPHNHQIAALAVGLKQTMSPGFKSYIKQVKANAVALGNHLMSKGYKLVTDGTE 295
Query: 359 VHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALTTRGLKE 538
HL L DLR +GL G E+V +LCS+ NKN V GD SA++P G+R+GTPA+T+RGL E
Sbjct: 296 NHLVLWDLRPLGLTGNKVEKVCDLCSITLNKNAVFGDSSAMSPGGVRIGTPAMTSRGLVE 355
Query: 539 ADIDKVVDFIDRALKIGLEIIKVSGLKLVDFNKAIEENAE 658
D ++ +F+ +A+ I L++ K G L FN+ +E N +
Sbjct: 356 EDFVQIAEFLHQAVTICLDVQKERGKLLKYFNEGLENNKD 395
>01_06_1521 + 37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 193 bits (470), Expect = 1e-49
Identities = 97/224 (43%), Positives = 131/224 (58%), Gaps = 5/224 (2%)
Frame = +2
Query: 2 VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANGQKVM-----YDLESK 166
VAA SPF+YCD+VT+TTHK LRGPR G+IFFR+G + G YD E +
Sbjct: 355 VAAKECRSPFDYCDVVTSTTHKNLRGPRGGIIFFRRGKNLRRRTGSFSQADENDYDFEDR 414
Query: 167 INQAVFPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISRGYSIAT 346
IN AVFP +QGGPHN+ E+ Y QV KNAQ L L+ R + T
Sbjct: 415 INFAVFPSMQGGPHNNHIAALAITLKQVATPEYKAYIIQVKKNAQALASALLRRKCRLVT 474
Query: 347 GGTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALTTR 526
GGTD HL L DLR +GL G E+V E C ++ NK + GD +++P G+R+GTPA+TTR
Sbjct: 475 GGTDNHLVLWDLRNLGLTGKNFEKVCEACHISINKMPIYGDNGSISPGGVRIGTPAMTTR 534
Query: 527 GLKEADIDKVVDFIDRALKIGLEIIKVSGLKLVDFNKAIEENAE 658
G E D + + DF+ RA +I ++K G +F + ++ N +
Sbjct: 535 GCLEDDFEVIADFLIRATQIASNLMKEHGKMQKEFLRGLQNNKD 578
>05_04_0394 -
20906923-20907146,20907251-20907340,20908380-20908785,
20909264-20910247
Length = 567
Score = 182 bits (443), Expect = 2e-46
Identities = 100/223 (44%), Positives = 128/223 (57%), Gaps = 6/223 (2%)
Frame = +2
Query: 2 VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANG------QKVMYDLES 163
VAA +PF+YCDIVT+TTHK+LRGPR G+IFFRKG K G + YD E
Sbjct: 325 VAAKECRNPFDYCDIVTSTTHKSLRGPRGGIIFFRKGKNLRKRVGSLTQVVENDQYDFED 384
Query: 164 KINQAVFPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISRGYSIA 343
+IN AVFP +QGGPHN+ EF Y +QV KNAQ L L+ R +
Sbjct: 385 RINFAVFPSMQGGPHNNHIAALAIALKQVAMPEFKAYIQQVKKNAQALAMALLRRKCRLV 444
Query: 344 TGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALTT 523
TGGTD HL L DLR GL G E+V E C ++ NK + GD +++P GTPA+TT
Sbjct: 445 TGGTDNHLMLWDLRTFGLTGKNFEKVCEACHISLNKTPIYGDNGSISPG----GTPAMTT 500
Query: 524 RGLKEADIDKVVDFIDRALKIGLEIIKVSGLKLVDFNKAIEEN 652
RG E+D + + +F+ RA I ++K G DF K +E N
Sbjct: 501 RGCLESDFEIMAEFLLRAAHIASIVLKEHGRLQKDFLKGLENN 543
>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +2
Query: 23 SPFEYCDIVTTTTHKTLRGPRAGVIFFRKG 112
S F +CD+VT+T +K L GPR G IFFR+G
Sbjct: 1677 SLFNHCDVVTST-NKNLTGPRGGTIFFRRG 1705
>12_01_0991 -
10057736-10058249,10058412-10059241,10059266-10060633,
10061785-10062327,10066274-10066498,10066590-10066640
Length = 1176
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 509 PALTTRGLKEADIDKVVDFIDRALKIGLEIIKVSG 613
PAL LK+ + K V F+ R+ GLE++ +SG
Sbjct: 501 PALKVLYLKQCGLRKTVPFLRRSNITGLEVLDISG 535
>06_01_0102 +
834660-834911,835460-835568,835891-836006,836116-836235,
836398-836436,836678-836811,837035-837299,837615-837698,
837943-838003,838748-838810,839174-839216,839632-839711,
839831-840267
Length = 600
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 639 ALLKSTSFSPETLMISRPIFNALSIKSTTLSI-SASLRPLVVNAGVPSLMPL 487
A L+ FSP LM+ + + KS++ SI S+ P V ++ VPS M +
Sbjct: 256 ARLREQDFSPSKLMVLKRVLEK-HFKSSSFSIGSSGATPQVSDSSVPSSMKI 306
>08_02_0959 - 23055078-23055177,23055408-23055985
Length = 225
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -1
Query: 624 TSF-SPETLMISRPIFNALS-IKSTTLSISASLRPLVVNAGVPSLMPLGLSAL 472
TSF SPE ++ +F L+ +++ + PLVVNA +PSL + L +
Sbjct: 25 TSFLSPEPSRLNFGVFATLNGTNASSSGLPVQSTPLVVNAALPSLYFMSLKGI 77
>08_02_0960 + 23058393-23059739
Length = 448
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -1
Query: 624 TSF-SPETLMISRPIFNALSIKSTTLSIS-ASLRPLVVNAGVPSLMPLGLSAL 472
TSF SPE ++ +F L+ + + S S PLVVNA +PSL + L +
Sbjct: 244 TSFLSPEPSRLNFGVFATLNGTNASSSGSPVQSTPLVVNAALPSLYFMSLKGI 296
>01_06_0157 +
27075179-27075529,27075849-27076043,27077705-27078036,
27078157-27078577
Length = 432
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 461 PGDISALNPSGIRLGTPALTTRGLKEADIDKVVDFIDRAL 580
P I+A+NPSG +LGT + + D V + D+ L
Sbjct: 255 PSRIAAVNPSGYQLGTDFIANNQVPGIDFATVHSYPDQWL 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,241,555
Number of Sequences: 37544
Number of extensions: 323591
Number of successful extensions: 1103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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