Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4h05
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    27   2.1  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.6  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   3.6  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   6.3  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   8.4  

>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -2

Query: 446 QSIYCEQSSGCNCAY-GRCLCVRTSMALWHVAPRAKSESPTGSVQYSPTARPPSIDVSVR 270
           + I  +Q S   C + GR    RT+  +W  + +  S++  G      TA   S   ++R
Sbjct: 27  RKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGAWTVTTAAATSARSTIR 86

Query: 269 RRR 261
           R R
Sbjct: 87  RLR 89


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
 Frame = +1

Query: 214 WHISSCSPEK**VK-QCRRRRTLTSMDGGRAVGLYCTEPVGLSLFARGATCQSAIDVRTH 390
           + ISSC          CR  R L S+D G+   +Y  +  G+          S I    +
Sbjct: 86  FRISSCPSSNAFASLMCRYERQLDSLDNGKTTDIYLNDIGGVISIHDSTGVYSQITTTPY 145

Query: 391 KHL-PYAQL 414
           K L  Y QL
Sbjct: 146 KSLEDYEQL 154


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 96   PTCIIKFMELSLAISCLTLHQYSYDLTDLPTLML 197
            P CI  F       + LT+H  S+ +T  P+LML
Sbjct: 1546 PQCIFNFSPKDRP-NPLTIHLQSFSITHFPSLML 1578


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 448 SHFAPRVETIQARELSRAKQTSDSVIYIE*LEIFN 552
           SHFAP+V  I  R +      SD++++   ++I++
Sbjct: 710 SHFAPKVNNISERNMEYT-SISDNLVFPSGMKIYD 743


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -2

Query: 551 LKISNYSM*ITLSLVCFARLSSRACIVSTRGAKCEQSIYCEQSSGCNCAYGRCL 390
           +K SN+   I  S +  A L S++C  ST   +C  ++    ++G    YGRC+
Sbjct: 214 IKQSNFDYYIEKSFLKTASLISKSCKASTILGQCSPTV--ATAAG---EYGRCI 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,737
Number of Sequences: 5004
Number of extensions: 38930
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)