Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4h05
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 33 0.23
03_01_0491 + 3720842-3720958,3721904-3723109 31 0.70
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 29 2.1
01_01_0541 - 3961465-3961620,3962239-3962568 29 2.1
12_02_0726 - 22552005-22552035,22552507-22552598,22552970-225530... 28 6.5
11_01_0749 - 6305087-6307522 28 6.5
05_04_0005 + 17063717-17063866,17065737-17065855,17066903-170672... 28 6.5
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 27 8.6
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +3
Query: 255 AVSAAADAYIDGWWSGCGAVLYGACGALTLRSWRDV 362
AVSAAA A + WW G G G G L + WR V
Sbjct: 16 AVSAAATASREKWWHGAGGEASGG-GHLVQKEWRRV 50
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +2
Query: 293 VVGLWGCTVRSLWGSHSSLVARRAKVPSTFVRTSICRMRNCSRCSAHNR 439
V WGC V W + ++ V S+ + + M NC R H R
Sbjct: 297 VAAYWGCMVPGAWNAPWPPQSQSQSVSSSSAASPVSTMTNCFRLGKHPR 345
>03_06_0030 +
31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 326 GSVQYSPTARPPSIDVSVRRRRHCFTYYFSGEH 228
GSVQ SP PPS DV++ R+ F S +H
Sbjct: 196 GSVQSSPNGFPPS-DVALNARQGTFDLQLSADH 227
>01_01_0541 - 3961465-3961620,3962239-3962568
Length = 161
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 407 AYGRCLCVRTSMALWHVAPRAKSESPTGSVQYSPTARPPSID-VSVRRRRHCFTYYFSG 234
A GR C+R++ W V R + T S+++ PTAR + RRRR T ++G
Sbjct: 11 AAGRRGCIRSTRGPWTVRRRGRGGGVTTSLRH-PTARERENNRQRERRRRQVATRIYAG 68
>12_02_0726 -
22552005-22552035,22552507-22552598,22552970-22553094,
22553221-22553311,22553475-22553755,22554211-22554394,
22554499-22554583,22554692-22554782,22554909-22555293,
22555457-22555669,22555873-22556418,22556572-22556788,
22556907-22557058,22557519-22557663,22557846-22557907,
22559130-22559291,22559393-22559482,22560055-22560215,
22560907-22560997,22561125-22561308,22561556-22561737,
22561857-22562086,22562622-22562685
Length = 1287
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 252 EAVSAAADAYIDGWWSGCGAVLYGACGAL 338
E AAD Y WW G VL G AL
Sbjct: 585 ELTKGAADNYHHSWWKRHGVVLDGEIAAL 613
>11_01_0749 - 6305087-6307522
Length = 811
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 410 CAYGRCLCVRTSMALWHVAPRAKSESP 330
CA GRC+CV + L P A S P
Sbjct: 357 CASGRCICVDCAFELNVATPNASSLGP 383
>05_04_0005 +
17063717-17063866,17065737-17065855,17066903-17067218,
17067579-17067722,17067909-17067926,17068853-17068954,
17069358-17069461,17069543-17069669,17069809-17069961,
17070261-17070361,17070538-17070739,17071245-17071469
Length = 586
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 485 RACIVSTRGAKCEQSIYCEQSSGCNCAYG 399
++C VS+R C Y ++SS C C G
Sbjct: 100 KSCSVSSRTGLCLGQCYHKKSSACKCKLG 128
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = -2
Query: 344 KSESPTGSVQYSPTARPPSIDVSVRRRRHCFTYYFSGEHDDICHIRSGTEHQ 189
++E + + + T +PP+ D ++R+H + +S ++ D SG+E +
Sbjct: 150 RTEDNSAAEKRVKTQKPPTHDKQKKKRKHYSSDSYSSDYSDTQSSDSGSESE 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,711,887
Number of Sequences: 37544
Number of extensions: 268901
Number of successful extensions: 901
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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