Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4h04
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    29   0.48 
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   4.5  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 284 ISGSAVSEQAGAV-RGSTSKESSFTMIYDSGMKSRSIPCPGTDITVTLHSFIHNKLT 117
           + G  +S   G+  +  T+  SS T   +SG  S S   P T ITVT +S I++  T
Sbjct: 114 VGGEGISSTTGSTFQSMTTFTSSQT---NSGHASASTSIPSTAITVTANSTIYSSAT 167


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 40  LVRFQCFPFYLVISVMQTYFLTKINIVSL 126
           L RF  F +YL I V+ TY++ K N   L
Sbjct: 583 LNRFTMFIYYLCILVLATYYVMKHNFYPL 611


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 341  HCGGRCGSGLXTVGREKS*ISGSAVSE-QAGAVRGSTSKESSFTMIYD 201
            +C G CG G    G  K+   G ++SE +A      TSK    T + D
Sbjct: 1008 YCVGFCGDGANDCGALKAADVGISLSEAEASVAAPFTSKWFEITCVLD 1055


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,573
Number of Sequences: 5004
Number of extensions: 25974
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)