Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4h04
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0199 - 12940459-12940689,12940787-12940930                       28   4.4  
02_04_0469 - 23178589-23178755,23179529-23179697,23179836-231799...    28   4.4  
01_03_0230 - 14004159-14004344,14004422-14004514,14004613-140046...    27   5.8  
02_05_0659 + 30679809-30680253,30680699-30680715,30682373-306825...    27   7.7  

>06_02_0199 - 12940459-12940689,12940787-12940930
          Length = 124

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 235 VEPRTAPACSLTAEPLI*LFSRPTVXSPDPHRPPQCSRTKHSSPST 372
           V PR  P+    A  +  +  +P   SP P   P CS    SSPS+
Sbjct: 2   VHPRGRPSKGRQAIGIRRIEDKPGGTSPSPRGGPGCSGRPRSSPSS 47


>02_04_0469 -
           23178589-23178755,23179529-23179697,23179836-23179919,
           23180495-23180647,23180798-23180950,23182488-23182589
          Length = 275

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 238 EPRTAPACSLTAEPLI*LFSRPTVXSPDPHRPPQCSRTKHSSPST 372
           E    PA +  AE +  +   P V +  P RP    +TK + PS+
Sbjct: 182 EKSETPAVTEAAEDIDEVIELPDVPTKAPERPEAAEKTKATKPSS 226


>01_03_0230 -
           14004159-14004344,14004422-14004514,14004613-14004673,
           14004761-14004874,14004955-14005206,14005293-14007037
          Length = 816

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 151 TVISVPGQGIERDFIPESYIIVK 219
           T I++PG+    DFIP++Y  V+
Sbjct: 257 TAIAIPGRTYNEDFIPDAYAKVQ 279


>02_05_0659 +
           30679809-30680253,30680699-30680715,30682373-30682530,
           30682570-30682846
          Length = 298

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 241 PRTAPACSLTAEPLI*LFSRPTVXSPDPH 327
           PRTA A S+ A   + LF   T  SP P+
Sbjct: 41  PRTAAAASVVASAAVWLFGHQTNASPRPN 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,381,451
Number of Sequences: 37544
Number of extensions: 195377
Number of successful extensions: 578
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)