Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4h04
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41540-5|AAK39229.2|  666|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U80031-4|AAB37614.1|   54|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical...    27   5.2  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical ...    27   9.1  
AC024817-53|AAP13744.1|  549|Caenorhabditis elegans Hypothetical...    27   9.1  
AC024817-52|AAF59568.4|  611|Caenorhabditis elegans Hypothetical...    27   9.1  

>U41540-5|AAK39229.2|  666|Caenorhabditis elegans Hypothetical
           protein F35H12.4 protein.
          Length = 666

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 278 GSAVSEQAGAV-RGSTSKESSFTMIYDSGMKSRSIPCPGTDITVTLHSFI 132
           GS+  + AGA+ R +  KES+ T  +DS  KSR  P   T +     +FI
Sbjct: 200 GSSYGKSAGALARAAIQKESTLTAEHDSYEKSRCGPI-STKLLTNQQNFI 248


>U80031-4|AAB37614.1|   54|Caenorhabditis elegans Hypothetical
           protein B0554.3 protein.
          Length = 54

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 190 FIPESYIIVKELSFEVEPRTAPACSLTAEPL 282
           F+PES +   E  F   P T P  S TA+PL
Sbjct: 3   FLPESLV---EACFATSPGTGPVASSTAQPL 30


>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
            protein Y39B6A.30 protein.
          Length = 1408

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 136  KLCKVTVISVPGQGIERDFIPESYIIVKE 222
            K C  T+ SV    I++D I ESY  + E
Sbjct: 1075 KFCNTTIESVNASTIDKDHITESYTYLPE 1103


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 307 VXSPDPHRPPQCSRTKHSS-PSTKXI 381
           V +P P +PPQ   T H++ P+TK +
Sbjct: 450 VETPKPSQPPQVKPTNHTAVPATKPV 475


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 386 CLMXLVEGELCLVREHC--GGRCGSGLXTVGREKS*ISGSAVSEQA 255
           C++  + GE C+  + C  G  C SG        + + G  +S Q+
Sbjct: 249 CVLLSIVGETCIANQQCVGGAMCNSGTCRCTNGATAMYGYCISSQS 294


>AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical
           protein Y62H9A.1 protein.
          Length = 366

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = +1

Query: 49  FQCFPFYLVISVMQTYFL---TKINIVSLL*IKLCKVT--VISVPGQGIERDF 192
           FQ   FY  ISV + YF+     + I S+L + L  +T  ++ V G+ ++RD+
Sbjct: 5   FQLPGFYTSISVQERYFVWLRRYMEITSVLNVFLTALTLYLVRVEGKTLKRDY 57


>AC024817-53|AAP13744.1|  549|Caenorhabditis elegans Hypothetical
           protein Y54G2A.26b protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -3

Query: 278 GSAVSEQAGAVRGSTSKESSFTMIYDSGMKSRSIPC--PGTDIT 153
           G  V E+ GA+ G  S ESS        +  R  PC  PGT  T
Sbjct: 367 GGQVFEEIGAIGGGMSTESSLDDKSAVKIPKRGRPCKAPGTTAT 410


>AC024817-52|AAF59568.4|  611|Caenorhabditis elegans Hypothetical
           protein Y54G2A.26a protein.
          Length = 611

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -3

Query: 278 GSAVSEQAGAVRGSTSKESSFTMIYDSGMKSRSIPC--PGTDIT 153
           G  V E+ GA+ G  S ESS        +  R  PC  PGT  T
Sbjct: 429 GGQVFEEIGAIGGGMSTESSLDDKSAVKIPKRGRPCKAPGTTAT 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,761,826
Number of Sequences: 27780
Number of extensions: 157384
Number of successful extensions: 376
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)