Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4h03
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   4.9  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   4.9  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    24   6.4  

>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = -3

Query: 276 FANINKIQYTDSQNYTTFATNTEHISRTL*H*QHNLISRVRLVSIGFDIPTVMTDRYSSF 97
           F NI     TDS   TT     +H   T+ H  H+L  R ++ S   DI      RY   
Sbjct: 337 FDNIEWTLPTDSP--TTAPRIAKHTYETIYHQWHSLRIREQIASFMLDIADHNVKRYGKS 394

Query: 96  VKGSN 82
            + S+
Sbjct: 395 EESSS 399


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = -1

Query: 302 RVLQQMSSNLQILTRYNTQ----IHKIILLLPLTQNIFLGHYNINNI 174
           ++L++++ NLQI T Y TQ    +   I +L ++++ +  H++ + I
Sbjct: 587 KLLKKVNRNLQIKTNYPTQEFHLLRPTIKILQISKHEYFLHFSSSYI 633


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 281  SNLQILTRYNTQIHKIILLLPLTQNIFLGHYNI 183
            SNLQ+   ++T  + +I   P T+N+++  YN+
Sbjct: 1074 SNLQLF--FSTDTY-VIFFEPNTENVYINSYNL 1103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,431,467
Number of Sequences: 5004
Number of extensions: 25673
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)