Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4h03
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0287 + 22759946-22760836                                         27   6.0  
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436...    26   7.9  
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619...    26   7.9  

>03_05_0287 + 22759946-22760836
          Length = 296

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 131 FRP**PIAIVALSKAAIGRGGWPIANTASYGVWKIIGYVLLD 6
           FRP    +  +L       GGW  + + S   W + GY L D
Sbjct: 85  FRPYAHASFYSLDTGEAASGGWTTSASTSAPSWSLEGYYLED 126


>01_06_1153 -
           34942608-34942975,34943082-34943330,34943516-34943625,
           34944698-34944771,34945237-34945306,34945848-34945947,
           34946045-34946120,34946572-34946646,34947067-34947156,
           34947238-34947354,34947457-34947567,34947649-34947788,
           34947962-34948043,34948224-34948303,34948938-34949046,
           34949295-34949417,34949972-34950044,34950338-34950489,
           34951029-34951127,34952258-34952383
          Length = 807

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 247 CVLYLVNICKLEDICCKTLSWKLH 318
           C L   N+C    +  +TL WKLH
Sbjct: 148 CKLVHGNVCVTSVVVTQTLDWKLH 171


>01_03_0014 + 11655216-11655287,11657833-11658048,11659848-11661912,
            11662966-11663013,11663081-11663328,11663429-11663558,
            11663707-11663983,11664102-11664180,11664311-11664397,
            11664586-11664618
          Length = 1084

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 349  LKHINYILFGNEVSKIG 299
            +K  N +LFGN+V+KIG
Sbjct: 972  IKSSNILLFGNDVAKIG 988


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,552,190
Number of Sequences: 37544
Number of extensions: 145263
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)