Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4h02
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701... 44 1e-04
02_04_0336 + 22121913-22122111,22122295-22122344,22122538-221226... 43 2e-04
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345... 41 8e-04
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791... 37 0.017
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 29 4.4
06_03_0792 + 24658324-24658763,24659167-24659387,24659765-246598... 29 4.4
03_02_0796 - 11251958-11251971,11252220-11252301,11252420-112525... 28 5.8
>04_04_0115 +
22868554-22868749,22868863-22868912,22870009-22870195,
22870226-22870333,22872501-22873165
Length = 401
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +3
Query: 396 KNRMSVQIISYGATITSIQXXXXXXXXXXXXAGFDTLEEYFQPRNPYFGATIGRYANIIR 575
K S+++ ++GA I S+ G+DT+ EY + YFGA +GR AN I
Sbjct: 42 KGDFSIRVTNWGAVIMSVVLPDSRGKLDDVVLGYDTIAEYVN-SSTYFGALVGRVANRIA 100
Query: 576 DATMVVRPSGRMYMLSNN 629
A V+ G+ Y L N
Sbjct: 101 KARFVL--DGKAYHLYPN 116
>02_04_0336 +
22121913-22122111,22122295-22122344,22122538-22122661,
22122810-22122917,22123610-22124265
Length = 378
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/78 (33%), Positives = 37/78 (47%)
Frame = +3
Query: 396 KNRMSVQIISYGATITSIQXXXXXXXXXXXXAGFDTLEEYFQPRNPYFGATIGRYANIIR 575
K S+++ ++GATI S+ G+DT+ EY YFG IGR AN I
Sbjct: 43 KGDFSIRVTNWGATIMSVILPDSKGNLADVVLGYDTVAEYVNG-TAYFGGLIGRVANRIA 101
Query: 576 DATMVVRPSGRMYMLSNN 629
+A + G+ Y L N
Sbjct: 102 NARFTL--DGKTYRLFRN 117
>10_01_0315 -
3454846-3455465,3455562-3455663,3455828-3455954,
3456698-3456727,3456828-3456877,3457004-3457106
Length = 343
Score = 41.1 bits (92), Expect = 8e-04
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Frame = +3
Query: 393 TKNRMSVQIISYGATITSIQXXXXXXXXXXXXAGFDTLEEYFQ----------PRNPYFG 542
+ R++ +I ++GATITS+ GFDTLE Y + +PYFG
Sbjct: 10 SNGRITAKIAAWGATITSLIVPDAHGNLADVVLGFDTLEPYMEYVGTGKGGQKGISPYFG 69
Query: 543 ATIGRYANIIRDATMVVRPSGRMYMLSNN 629
+GR AN I++ + +G Y L+ N
Sbjct: 70 CIVGRVANRIKEGKFTL--NGVEYSLAIN 96
>04_04_0116 +
22877296-22877482,22877578-22877627,22879057-22879180,
22879266-22879373,22879462-22880084
Length = 363
Score = 36.7 bits (81), Expect = 0.017
Identities = 26/83 (31%), Positives = 36/83 (43%)
Frame = +3
Query: 366 EVVRRYTWRTKNRMSVQIISYGATITSIQXXXXXXXXXXXXAGFDTLEEYFQPRNPYFGA 545
+ V Y R K SV+I ++GAT+ S+ G DT+ EY N YFG
Sbjct: 30 KTVGEYVLR-KGDFSVKITNWGATMMSVVLPDSKGNLADVVLGLDTIAEYVNDTN-YFGP 87
Query: 546 TIGRYANIIRDATMVVRPSGRMY 614
GR I V+ G++Y
Sbjct: 88 VTGRVGQRIARGRFVL--DGKVY 108
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 528 NPYFGATIGRYANIIRDATMVVRPSGRMYMLSNN 629
+PYFG +GR AN I+D + + + Y L+ N
Sbjct: 204 SPYFGCIVGRVANRIKDGKFTL--NDKQYSLAIN 235
>06_03_0792 +
24658324-24658763,24659167-24659387,24659765-24659827,
24659849-24660102
Length = 325
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +3
Query: 126 EGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLM-PKSMKVPKNRTS--NAFEESK 296
E GD ++ + TP E + DVE VDG M K + +NR S + E K
Sbjct: 106 EAGGSTDGDSGKENEVATPDAEKE--DVEAEVDGDDPMSKKKRRQMRNRDSAMKSRERKK 163
Query: 297 QMLKEIKVTNEEAKSPC 347
+K+++ ++ ++ C
Sbjct: 164 MYVKDLETKSKYLEAEC 180
>03_02_0796 -
11251958-11251971,11252220-11252301,11252420-11252500,
11252892-11253004,11253081-11253177,11253525-11253839,
11253936-11253984,11254148-11254641,11254772-11254836,
11255074-11255239,11257016-11257654
Length = 704
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 138 KASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKV---PKNRTSNAFEE 290
K GD+ ++ T Q + V+ G GLMP S KV P + S AFEE
Sbjct: 196 KGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRSIPLDGNSEAFEE 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,769,713
Number of Sequences: 37544
Number of extensions: 324859
Number of successful extensions: 1007
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -