Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4g23
         (164 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    57   4e-10
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   0.44 
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    25   1.3  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   2.3  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    24   3.1  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    23   7.1  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         23   7.1  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    22   9.4  
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    22   9.4  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    22   9.4  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 56.8 bits (131), Expect = 4e-10
 Identities = 27/44 (61%), Positives = 34/44 (77%)
 Frame = +1

Query: 4   PLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 135
           PLDLR KKTRA+R+ALT +E   KT K+I+K+  FP R YA+KA
Sbjct: 79  PLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALKA 122


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -3

Query: 147 IIYSSFNGIDSRW---EERFLSDLFPRLDLCF 61
           +++ +F  + + W   E  FLS +FPR   CF
Sbjct: 246 VVFGAFPSLHAGWAMLEALFLSHVFPRYRFCF 277


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 156 LILIIYSSFNGIDSRWEERFLSDLFPRLDLCF 61
           LI  +  S+   DS+W E+FL D F  + + +
Sbjct: 25  LIWFLGHSYKIEDSQWPEKFLYDSFSLITITY 56


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 10  DLRAKKTRAMRKALTKHEAKIKTRKEIRKKS 102
           D++ K  RAMR+ +   +   +  +++RKK+
Sbjct: 677 DMQTKAKRAMRETMVFWKRNERVERDLRKKA 707


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 1   KPLDLRAKKTRAMRKALTKHEAKIKTRKE 87
           KP+DLR +  R  R  +T  + +  T  E
Sbjct: 141 KPVDLRTQHNRPQRPVVTPAKRRFNTTPE 169


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +2

Query: 29  PVLCARLLLNTKQR---SRRGKRSER--NLSSHLESMPLKL 136
           PV+C   LLN KQ      +  RSER  N   +LE+   KL
Sbjct: 294 PVVCTNWLLNNKQHLPIQCKRFRSERRANARFYLENCVSKL 334


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 107 KRDFFLISFLVLIFASCLV 51
           K  + L  FL +IFA+C+V
Sbjct: 29  KTQWLLYVFLFIIFANCVV 47


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 25  KTRAMRKALTKHEAKIKTRKEIRKK 99
           K +    ALTK+E+ +K   E+ K+
Sbjct: 522 KLQEREHALTKYESSLKAELEVYKQ 546


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 34  AMRKALTKHEAKIKTRKEIRKK 99
           A R A+ KH+ K+K     +KK
Sbjct: 175 ATRAAMLKHKPKVKPSSGTKKK 196


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 83  KRSERNLSSHLESMPL 130
           K SER +SSH+E + L
Sbjct: 385 KESERFISSHVEDLSL 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 549,885
Number of Sequences: 5004
Number of extensions: 6626
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)