Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4g23
         (164 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    41   2e-04
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    33   0.024
03_06_0755 - 36029836-36030123,36030352-36030444,36030601-360306...    26   4.7  
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616...    25   8.3  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 18/62 (29%)
 Frame = +1

Query: 4   PLDLRAKKTRAMRKALTKH------------------EAKIKTRKEIRKKSLFPPRVYAV 129
           PLDLR KKTRA+R+ LTKH                  +  +KT +E +++  FP R YA+
Sbjct: 80  PLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSLKTEREKKREKYFPMRKYAI 139

Query: 130 KA 135
           KA
Sbjct: 140 KA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 33.5 bits (73), Expect = 0.024
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 4   PLDLRAKKTRAMRKALTKHEAKI 72
           PLDLR KKT A+R+ LTKH+  +
Sbjct: 173 PLDLRPKKTCAIRRRLTKHQGML 195


>03_06_0755 -
           36029836-36030123,36030352-36030444,36030601-36030676,
           36030755-36030880,36030957-36031013,36031132-36031253
          Length = 253

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -1

Query: 92  LISFLVLIFASCLVRAL--RIARVFLALKSKG 3
           L+S +VLI  SC VR++   +  + LAL++KG
Sbjct: 215 LLSIIVLIHVSCSVRSIFPLLQALRLALENKG 246


>10_08_0343 - 16960764-16960895,16961166-16961171,16961272-16961640,
            16962118-16962304,16962567-16962759,16962864-16963137,
            16963215-16963374,16963985-16964199,16964784-16964876,
            16965192-16965260,16965293-16965445,16965534-16965737,
            16966416-16966691,16967336-16967431,16967585-16967788,
            16967877-16968069,16968229-16968374,16968771-16969425,
            16971462-16971774,16971989-16972139,16972602-16973815,
            16973933-16974182,16974784-16975035
          Length = 1934

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 32   VLCARLLLNTKQRSRRGKRS 91
            VLCA L  N  Q  RRGKR+
Sbjct: 1781 VLCAGLYPNVVQCKRRGKRT 1800


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,480,609
Number of Sequences: 37544
Number of extensions: 39479
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 14,793,348
effective HSP length: 35
effective length of database: 13,479,308
effective search space used: 256106852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)