Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4g23
(164 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal prote... 46 4e-06
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 28 1.0
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 28 1.0
Z81588-4|CAB04713.1| 413|Caenorhabditis elegans Hypothetical pr... 27 2.4
U97404-2|AAB93309.1| 795|Caenorhabditis elegans Acid-sensing/am... 27 2.4
AL031624-1|CAA20940.1| 413|Caenorhabditis elegans Hypothetical ... 27 2.4
AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical ... 26 4.1
U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily ass... 25 7.2
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 25 7.2
Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical p... 25 9.5
Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical p... 25 9.5
Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical pr... 25 9.5
AL117195-13|CAB55023.2| 455|Caenorhabditis elegans Hypothetical... 25 9.5
AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein. 25 9.5
>L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 35 protein.
Length = 123
Score = 46.0 bits (104), Expect = 4e-06
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = +1
Query: 1 KPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 135
KP+DLR KKTRA+R+ LT HE +++ K+ K R +AVKA
Sbjct: 79 KPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVKA 123
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 1 KPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 99
+ +D K+ R +RKA+TK E KIK KE K
Sbjct: 273 RAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 1 KPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 99
+ +D K+ R +RKA+TK E KIK KE K
Sbjct: 345 RAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 1 KPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 99
+ +D K+ R +RKA+TK E KIK KE K
Sbjct: 345 RAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378
>Z81588-4|CAB04713.1| 413|Caenorhabditis elegans Hypothetical
protein T07D10.4 protein.
Length = 413
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 117 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 25
S W+ + +FPR+D C S + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262
>U97404-2|AAB93309.1| 795|Caenorhabditis elegans
Acid-sensing/amiloride-sensitiveion channel family
protein 1 protein.
Length = 795
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 147 IIYSSFNGIDSRWEERFLSDLFPRLDLCFVFSKSLAHST 31
I+ SFNG + + F+ L P CF + + L ++T
Sbjct: 463 IMKCSFNGRECNVKHDFVEYLDPTYGACFTYGQKLGNNT 501
>AL031624-1|CAA20940.1| 413|Caenorhabditis elegans Hypothetical
protein H16D19.1 protein.
Length = 413
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 117 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 25
S W+ + +FPR+D C S + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262
>AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical
protein Y6E2A.8 protein.
Length = 444
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 10 DLRAKKTRAMRKALTKHEAKIKTRKEIRK 96
DL+ +K M++A EA++K +KE K
Sbjct: 318 DLKMRKRETMKRAEKMKEAELKKKKESSK 346
>U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily
assigned gene nameprotein 130 protein.
Length = 756
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 156 LILIIYSSFNGIDSRWEERFLSDLFPRLD 70
+++ +Y F+GI WE RF+S + L+
Sbjct: 285 IVVFVYHYFDGI---WERRFVSRAYTHLE 310
>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 1 protein.
Length = 1616
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 65 QRSRRGKRSERNLSSHLESMP 127
Q+S+ K+ ERN+ H MP
Sbjct: 1178 QQSKEQKKYERNMDRHFNGMP 1198
>Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical
protein ZK1098.10d protein.
Length = 1185
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 16 RAKKTRAMRKALTKHEAKIKTRKE 87
R + M++ +TKHE +IKT K+
Sbjct: 381 RQMVSEKMQEQITKHEEEIKTLKQ 404
>Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical
protein ZK1098.10b protein.
Length = 1157
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 16 RAKKTRAMRKALTKHEAKIKTRKE 87
R + M++ +TKHE +IKT K+
Sbjct: 381 RQMVSEKMQEQITKHEEEIKTLKQ 404
>Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical
protein ZK1098.10a protein.
Length = 1139
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 16 RAKKTRAMRKALTKHEAKIKTRKE 87
R + M++ +TKHE +IKT K+
Sbjct: 363 RQMVSEKMQEQITKHEEEIKTLKQ 386
>AL117195-13|CAB55023.2| 455|Caenorhabditis elegans Hypothetical
protein Y57A10A.20 protein.
Length = 455
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 29 PVLCARLLLNTKQRSRRG 82
P LC+RLLLN ++ R G
Sbjct: 25 PGLCSRLLLNPDRKCRAG 42
>AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein.
Length = 1157
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 16 RAKKTRAMRKALTKHEAKIKTRKE 87
R + M++ +TKHE +IKT K+
Sbjct: 381 RQMVSEKMQEQITKHEEEIKTLKQ 404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,115
Number of Sequences: 27780
Number of extensions: 35729
Number of successful extensions: 175
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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