Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4g20
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 28 1.0
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 28 1.3
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 27 2.3
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 27 3.1
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar... 26 5.3
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 26 5.3
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 26 5.3
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 26 5.3
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 7.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 7.1
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 25 7.1
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 25 9.3
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 9.3
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 25 9.3
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 9.3
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 9.3
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +3
Query: 252 VPEKLKENLKNITRRIDRVRKKIDMGNLVYRSKDYEYVVKAIFENMDVLSSVLEPIT 422
V ++ +L N+TR++DR+ ++ N + + + + F N D+ L IT
Sbjct: 242 VQRDMRNDLSNLTRKVDRMDMRLSRNNNMIMRSFAQPITEVPFFNGDIPDPNLPRIT 298
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +3
Query: 120 RISIVLDKLLDYYERKPSKDPEWYIALGMARGQLEYTINELDKAVPEKLKENLKNITRRI 299
RI+ V + P K P YI G+ +++ + + E +E +KN +I
Sbjct: 738 RIAYVAQAAFTHLGHHPDKTPSEYIQWRFQSGEDLEAMDKASRVISEADEEAMKNKIFKI 797
Query: 300 DRVRKKI 320
+ ++KI
Sbjct: 798 EGTQRKI 804
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 78 FDTQDFI--YNVPKVYRISIVLDKLLDYYERKPSKDPEWYIALGMARGQLEYTINEL 242
F+T+D + +N+PKV L LLD+ E P Y L + + QL E+
Sbjct: 145 FETKDLVRRFNIPKVIYCLHALSYLLDFLE-VTRHVPSLYGKLRIKKSQLNTATKEI 200
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 228 TINELDKAVPEKLKENLKNITRRIDRV 308
++ +++ + E L+E KN+T +IDRV
Sbjct: 262 SVPSMNRRMKEVLEEGSKNVTAKIDRV 288
>SPBC25H2.08c |mrs2||magnesium ion transporter
Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 369 SLHIRNPYFGTPNSPYQFFFERGLFFALCS-LNSLSVFQ 256
SL+ N G N PY F+ G FA + L+SL + +
Sbjct: 353 SLYGMNLQNGLENHPYAFYITTGSIFAFAAFLSSLGILK 391
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -1
Query: 438 YPSFLV*SVLKHSTVHPCFQ---KLLSLHIRNPYFGTPNSPY 322
YP+ + + TV PC L LHI+ YFG N +
Sbjct: 257 YPASVFKETTLYVTVEPCLMCAAALKQLHIKAVYFGCGNDRF 298
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -2
Query: 395 YIHVFKNCFHYIFVILTSVHQIPHINFFSNAVYSSRYVL*ILFQFFRNRFVQFINSIF*L 216
Y+ F C +++ ++ + I NA Y S L + N F+ +NSIF +
Sbjct: 112 YMDDFPTCAYFVIFSISFLLGISGTGPSLNASYKSLCKL----YSYENSFIVVLNSIFVV 167
Query: 215 ASC 207
+SC
Sbjct: 168 SSC 170
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +3
Query: 225 YTINELDKAVPEKLKENLKNITRRIDRVRKKIDMGNLVYRSKDYEYVVKAIFENMDVLSS 404
Y LDK+ P KL + N+ + + + K + +Y E + + + +DV +
Sbjct: 223 YLCGVLDKSGPSKLDNLIANLRKNLPALHKPLLEFLAMYEPSSSEEIYQKLANEVDVPHA 282
Query: 405 VL 410
L
Sbjct: 283 AL 284
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +3
Query: 207 ARGQLEYTINELDKAVPE----KLKENLKNITRRIDRVRKKIDM 326
AR Q+E TIN L +P L L I R+DR R + +
Sbjct: 75 ARKQIEITINHLVSRLPSIVLPFLVRRLTTIAGRLDRFRSTVSV 118
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 318 FFFERGLFFALCSLNSLSVFQEP 250
FFFE FFA CS S F P
Sbjct: 222 FFFESAHFFAQCSYLKKSNFPSP 244
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -3
Query: 496 IFVRASCRYCSNVNLYGFC--VPIVPSVIGSKTLDSTSM 386
++V A+ ++C+++ LYGF +P++ +G L + M
Sbjct: 289 VYVSATSQFCADMVLYGFSSFLPVIIKGLGFVGLQTNYM 327
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +3
Query: 252 VPEKLKENLKNITRRIDRVRKKIDMGNL-VYRSKDYEYVVKAIFENMDVLSSVLEPITLG 428
+PE + NL+ ++ + ++ + D GN+ + ++D E ++ + ++ +L
Sbjct: 1057 IPEPILPNLQKLSTQYSKIVRDNDYGNVNCWFNRDTECYRGSMQKGRKNIALLLRGF-FC 1115
Query: 429 TMGTQKPYRFTFEQYLQEARTKMPSRKAAD 518
G Y F +E Y+ + + RK+ +
Sbjct: 1116 YYGLTTQYSFDWEAYMIDISSSQLKRKSTE 1145
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 395 YIHVFKNCFHYIFVILTSVHQIPHINFFSNAVY 297
+I ++ FH+I I V+ + HI FS ++
Sbjct: 126 WICLWSMIFHFIIAIANGVYFVKHITKFSCEIF 158
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.0 bits (52), Expect = 9.3
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Frame = +3
Query: 354 YEYVVKAIFENMDVLSSVLEPITLGTMGTQKPYRFTFEQYLQEARTKMPSRKAADAC-TM 530
Y +V + + V S + P+T T T + Y + PS + T
Sbjct: 1407 YTTIVSSTVVSTVVPGSTVYPVTHVTTTTGVSGESSAFTYTTSSTQYEPSTVVTTSYYTT 1466
Query: 531 QLLISAMETQTTQSDGVCEMTPECSSQIIQGSG 629
+ SA T+T S E + S+ I QGSG
Sbjct: 1467 SVYTSAPATETVSSTEAPESSTVTSNPIYQGSG 1499
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 436 VHKNHTDL-RSNNTYKKLVRRCPVEKL 513
V++ HT + + NNTY+ +V P +K+
Sbjct: 77 VYQGHTFIDKKNNTYRAIVTIAPYQKI 103
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +3
Query: 309 RKKIDMGNLVYRSKDYEYVVKAIFENMDVLSSVLEPITLGTMGTQKPYRFTFEQYLQEAR 488
RK + + LV ++ +E + + +FE++ L P T T+ ++ ++ T E+ +QE +
Sbjct: 663 RKGLILSYLVEQNGAFE-ISRKMFEDLADLKVRRNPETSRTVMDRRTFQQTLEKLMQEKK 721
Query: 489 TK 494
+
Sbjct: 722 VR 723
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 240 LDKAVPEKLKENLKNITRRIDRVRKKIDMGNLVYRSKDYEYVVKAIFE 383
+DK L + KN+ + I+ V ID+ L ++Y+++A F+
Sbjct: 448 VDKVYTNVLNNHCKNLEKLIELVETTIDLEAL----DSHQYIIRAEFD 491
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,583
Number of Sequences: 5004
Number of extensions: 59372
Number of successful extensions: 203
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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